RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HTR2CP28335 458 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 PDCD1Q15116 288 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 PIGYQ3MUY2 71 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 CD200R1LQ6Q8B3 271 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 LY6G5BQ8NDX9 201 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 OR51T1Q8NGJ9 327 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 OR6M1Q8NGM8 313 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 C8orf46Q8TAG6 207 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 DACT3Q96B18 629 aaPredicted RBP14.21□□□□□ -0.13
CLN3-217ENST00000565354 JMJD8Q96S16 334 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 CST11Q9H112 138 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 GHRLQ9UBU3 117 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 OPN4Q9UHM6 478 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 A0A1W2PP11 408 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 FUOMA2VDF0 154 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 MGST3O14880 152 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 OR7C1O76099 320 aaPredicted RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 RBM11P57052 281 aaKnown RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 PAN3Q58A45 887 aaKnown RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 AWAT1Q58HT5 328 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 C17orf107Q6ZR85 190 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 C1orf229Q6ZS94 237 aaPredicted RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 LINC00596Q86U02 117 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 OR4S1Q8NGB4 309 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 MRPS24Q96EL2 167 aaKnown RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 DMRTB1Q96MA1 342 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 WDFY2Q96P53 400 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 CHCHD6Q9BRQ6 235 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 OR51E2Q9H255 320 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 PPA2Q9H2U2 334 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 BANF2Q9H503 90 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 C19orf12Q9NSK7 152 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 TXNL4BQ9NX01 149 aaKnown RBP14.2□□□□□ -0.14
CLN3-217ENST00000565354 KPTNQ9Y664 436 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 V9GY05 133 aa14.2□□□□□ -0.14
CLN3-217ENST00000565354 TRAV1-2A0A0B4J238 106 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 LOC100506127A0A0U1RQW1 187 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 HSPB6O14558 160 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 PSPNO60542 156 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 MGMTP16455 207 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 EPHA1P21709 976 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 RAB11BQ15907 218 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 TIMM50Q3ZCQ8 353 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 C1orf100Q5SVJ3 147 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 ATAD3CQ5T2N8 411 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 Q6P435 159 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 LYPD6Q86Y78 171 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 KIR3DL3Q8N743 410 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 Q8NFD4 153 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 UPRTQ96BW1 309 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 SELENOIQ9C0D9 397 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 ING3Q9NXR8 418 aa14.19□□□□□ -0.14
CLN3-217ENST00000565354 TRAV40A0A0B4J280 105 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 A0A0G2JK05 382 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 hCG_1809904A0A1W2PP81 198 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 A0A1W2PPE2 198 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 A0A1W2PR64 198 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 A0A1W2PRV1 198 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 hADV38S2A0JD32 116 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 M0R1W7 72 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 SLC33A1O00400 549 aaPredicted RBP14.18□□□□□ -0.14
CLN3-217ENST00000565354 SLC17A2O00624 439 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 GEMIN2O14893 280 aaKnown RBP14.18□□□□□ -0.14
CLN3-217ENST00000565354 MPIG6BO95866 241 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 RAB3BP20337 219 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 GADD45AP24522 165 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 LMO1P25800 156 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 FGF9P31371 208 aaPredicted RBP14.18□□□□□ -0.14
CLN3-217ENST00000565354 OR3A1P47881 315 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 ATXN7L3Q14CW9 347 aaPredicted RBP14.18□□□□□ -0.14
CLN3-217ENST00000565354 P2RY14Q15391 338 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 TAF9Q16594 264 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 MPV17LQ2QL34 196 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 NHLRC3Q5JS37 347 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 GPR157Q5UAW9 335 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 TRAPPC6BQ86SZ2 158 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 NEK7Q8TDX7 302 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 FAM46BQ96A09 425 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 NUP50Q9UKX7 468 aa14.18□□□□□ -0.14
CLN3-217ENST00000565354 IGHV3OR16-10A0A075B7F0 116 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 SLC22A1O15245 554 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 BPNT1O95861 308 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 ARSBP15848 533 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 JUNBP17275 347 aaPredicted RBP14.17□□□□□ -0.14
CLN3-217ENST00000565354 MEF2CQ06413 473 aaPredicted RBP14.17□□□□□ -0.14
CLN3-217ENST00000565354 KRBOX4Q5JUW0 171 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 HES5Q5TA89 166 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 VMO1Q7Z5L0 202 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 TPRX1Q8N7U7 411 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 KCNG3Q8TAE7 436 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 LHX4Q969G2 390 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 KCTD7Q96MP8 289 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 MRPS26Q9BYN8 205 aaKnown RBP14.17□□□□□ -0.14
CLN3-217ENST00000565354 MS4A7Q9GZW8 240 aaPredicted RBP14.17□□□□□ -0.14
CLN3-217ENST00000565354 SIRPDQ9H106 197 aa14.17□□□□□ -0.14
CLN3-217ENST00000565354 VWFP04275 2813 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 TRIM64CA6NLI5 447 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 MMP9P14780 707 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 FPR2P25090 351 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 ERP29P30040 261 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms