RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SPACA5Q96QH8 159 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 ZNF286AQ9HBT8 521 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 EXOGQ9Y2C4 368 aaKnown RBP13.66□□□□□ -0.22
CLN3-216ENST00000565316 PCDHGB5Q9Y5G0 923 aa13.66□□□□□ -0.22
CLN3-216ENST00000565316 BUB1B-PAK6H3BSN5 160 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 SLC33A1O00400 549 aaPredicted RBP13.65□□□□□ -0.22
CLN3-216ENST00000565316 AMY1AP04745 511 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 AMY2AP04746 511 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 KPNB1Q14974 876 aaKnown RBP13.65□□□□□ -0.22
CLN3-216ENST00000565316 HLA-DRB5Q30154 266 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 FOXB2Q5VYV0 432 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 ACBD7Q8N6N7 88 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 OR13C3Q8NGS6 347 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 STMN2Q93045 179 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 SLC25A33Q9BSK2 321 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 ZCCHC4Q9H5U6 513 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 TSSC4Q9Y5U2 329 aaPredicted RBP13.65□□□□□ -0.22
CLN3-216ENST00000565316 COL7A1Q02388 2944 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 KIAA2026Q5HYC2 2103 aa13.65□□□□□ -0.22
CLN3-216ENST00000565316 A0A1W2PRX2 142 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 OOSP1A8MZH6 123 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 J3QLW9 94 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 OCM2P0CE71 109 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 OCMP0CE72 109 aaPredicted RBP13.64□□□□□ -0.23
CLN3-216ENST00000565316 CGB3P0DN86 165 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 CGB7P0DN87 165 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ZNF44P15621 663 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ZNF19P17023 458 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 CD33P20138 364 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 CEACAM3P40198 252 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 PTGFRP43088 359 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ARHGDIBP52566 201 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ZP1P60852 638 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ALKBH1Q13686 389 aaKnown RBP13.64□□□□□ -0.23
CLN3-216ENST00000565316 CDK5R1Q15078 307 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 C17orf58Q2M2W7 97 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 TPTE2P1Q5T6R2 138 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 CENPVQ7Z7K6 275 aaPredicted RBP13.64□□□□□ -0.23
CLN3-216ENST00000565316 OR4D6Q8NGJ1 314 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 OR5D18Q8NGL1 313 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 LGALS12Q96DT0 336 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 C4orf36Q96KX1 117 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 NEK6Q9HC98 313 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 MYRFQ9Y2G1 1151 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 TCRBV4S1A1TA0A5B7 111 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 FAM172BPA6NC97 362 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ZNF729A6NN14 1252 aaPredicted RBP13.64□□□□□ -0.23
CLN3-216ENST00000565316 TOR1AO14656 332 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 DEGS1O15121 323 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 LPLP06858 475 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 RPSAP08865 295 aaKnown RBP13.64□□□□□ -0.23
CLN3-216ENST00000565316 IGLL1P15814 213 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 PRRX1P54821 245 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 SCN1BQ07699 218 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 ABCA11PQ4W5N1 156 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 KRBOX4Q5JUW0 171 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 UTF1Q5T230 341 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 SYS1Q8N2H4 156 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 CAPSLQ8WWF8 208 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 MYDGFQ969H8 173 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 NCOR1P1Q9H4R4 102 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 LINC00574Q9H8X3 128 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 NBEAL2Q6ZNJ1 2754 aa13.64□□□□□ -0.23
CLN3-216ENST00000565316 KBTBD11-OT1A0A1B0GTJ5 212 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A18PA6NE21 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A16PA6NEW6 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A20PA6NIJ5 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 SNTNA6NMZ2 147 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A9PA6NNJ1 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A12PA8MX19 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A5PA8MXJ8 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 M0QZK8 103 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 CIB2O75838 187 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A15PP0C7V4 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A13PP0C7W8 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A14PP0C7W9 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 FAM90A24PP0C7X0 464 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 PF4V1P10720 104 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 DBTP11182 482 aaKnown RBP13.63□□□□□ -0.23
CLN3-216ENST00000565316 GABRB1P18505 474 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 GALEQ14376 348 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 KISS1Q15726 138 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 ELP2Q6IA86 826 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 CCDC144NLQ6NUI1 221 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 CCDC121Q6ZUS5 278 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 PARP16Q8N5Y8 322 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 OR51T1Q8NGJ9 327 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 OR5D14Q8NGL3 314 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 PYDC1Q8WXC3 89 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 MRPL48Q96GC5 212 aaKnown RBP13.63□□□□□ -0.23
CLN3-216ENST00000565316 MYCBPQ99417 103 aaPredicted RBP13.63□□□□□ -0.23
CLN3-216ENST00000565316 ZNF649Q9BS31 505 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 PPIL3Q9H2H8 161 aaKnown RBP13.63□□□□□ -0.23
CLN3-216ENST00000565316 OR6C3Q9NZP0 311 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 ORC6Q9Y5N6 252 aa13.63□□□□□ -0.23
CLN3-216ENST00000565316 EI24O14681 340 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 SULT1B1O43704 296 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 ZFPL1O95159 310 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 TMEM225BP0DP42 221 aa13.62□□□□□ -0.23
CLN3-216ENST00000565316 MTNR1BP49286 362 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms