RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TMEM82A0PJX8 343 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 GPR37O15354 613 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 SOCS1O15524 211 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 RGS5O15539 181 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 HPGDSO60760 199 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 TK1P04183 234 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 CHATP28329 748 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 C11orf91Q3C1V1 193 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 ZNF841Q6ZN19 808 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 C17orf107Q6ZR85 190 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 Q6ZTK2 550 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 BIVMQ86UB2 503 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 OR8H2Q8N162 312 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 ZNRF1Q8ND25 227 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 WFDC11Q8NEX6 87 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 TMEM185AQ8NFB2 350 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 DPCDQ9BVM2 203 aaPredicted RBP17.16■□□□□ 0.34
CLN3-212ENST00000564574 REG4Q9BYZ8 158 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 SLC25A10Q9UBX3 287 aaPredicted RBP17.16■□□□□ 0.34
CLN3-212ENST00000564574 ITGB1BP2Q9UKP3 347 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 PEX16Q9Y5Y5 336 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 A0A1B0GW55 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 FAM25AB3EWG3 89 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 FAM25CB3EWG5 89 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 FAM25GB3EWG6 89 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 MCRIP1C9JLW8 97 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 CTDSP2O14595 271 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DVL1O14640 695 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 MGST3O14880 152 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 PSPNO60542 156 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 CSN2P05814 226 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 EIF4EP06730 217 aaKnown RBP17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L2P0CJ85 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L3P0CJ86 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L4P0CJ87 422 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L5P0CJ88 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L6P0CJ89 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L7P0CJ90 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 TMEM50BP56557 158 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 ESCO2Q56NI9 601 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 NKAPLQ5M9Q1 402 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4L9Q6RFH8 374 aaPredicted RBP17.15■□□□□ 0.34
CLN3-212ENST00000564574 RAB3CQ96E17 227 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 SHARPINQ9H0F6 387 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 MIXL1Q9H2W2 232 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 PLEKHJ1Q9NW61 149 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 PTTG2Q9NZH5 202 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 ZNF581Q9P0T4 197 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 DUX4Q9UBX2 424 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 CLN8Q9UBY8 286 aa17.15■□□□□ 0.34
CLN3-212ENST00000564574 SELLP14151 372 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 ELK1P19419 428 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 S100A5P33763 92 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 OR3A1P47881 315 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 GNB2P62879 340 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 PAX5Q02548 391 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 GRK1Q15835 563 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 MOGAT2Q3SYC2 334 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 WDR25Q64LD2 544 aaPredicted RBP17.14■□□□□ 0.33
CLN3-212ENST00000564574 METAP1DQ6UB28 335 aaPredicted RBP17.14■□□□□ 0.33
CLN3-212ENST00000564574 OR4S1Q8NGB4 309 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 PECRQ9BY49 303 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 PPA2Q9H2U2 334 aa17.14■□□□□ 0.33
CLN3-212ENST00000564574 FUOMA2VDF0 154 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 A8MXK9 166 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 RNF223E7ERA6 249 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 XRCC3O43542 346 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 CA11O75493 328 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 CLPXO76031 633 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 CDK2P24941 298 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 ERP29P30040 261 aaKnown RBP17.13■□□□□ 0.33
CLN3-212ENST00000564574 TALDO1P37837 337 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 GDPD3Q7L5L3 318 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 LAX1Q8IWV1 398 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 NEK7Q8TDX7 302 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 ARHGAP5-AS1Q96IT6 56 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 WDFY2Q96P53 400 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 SSBP3Q9BWW4 388 aaPredicted RBP17.13■□□□□ 0.33
CLN3-212ENST00000564574 CHST6Q9GZX3 395 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLN3-212ENST00000564574 CSMD2Q7Z408 3487 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 YLPM1P49750 1951 aaKnown RBP17.13■□□□□ 0.33
CLN3-212ENST00000564574 CR1P17927 2039 aa17.13■□□□□ 0.33
CLN3-212ENST00000564574 FOXH1O75593 365 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 TPPPO94811 219 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 ECDO95905 644 aaPredicted RBP17.12■□□□□ 0.33
CLN3-212ENST00000564574 GSTP1P09211 210 aaKnown RBP17.12■□□□□ 0.33
CLN3-212ENST00000564574 HIST1H1DP16402 221 aaKnown RBP17.12■□□□□ 0.33
CLN3-212ENST00000564574 NDUFB7P17568 137 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 PLAC9Q5JTB6 97 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 CD276Q5ZPR3 534 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 C6orf201Q7Z4U5 140 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 ST8SIA4Q92187 359 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 C1orf159Q96HA4 380 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 RABL2AQ9UBK7 228 aaPredicted RBP17.12■□□□□ 0.33
CLN3-212ENST00000564574 RABL2BQ9UNT1 228 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 DSCAML1Q8TD84 2053 aa17.12■□□□□ 0.33
CLN3-212ENST00000564574 SERPINE3A8MV23 424 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 MFNGO00587 321 aa17.11■□□□□ 0.33
CLN3-212ENST00000564574 HSPB6O14558 160 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms