RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OCMP0CE72 109 aaPredicted RBP13.4□□□□□ -0.26
CLN3-211ENST00000564091 ZNF44P15621 663 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 FASP25445 335 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 LMO1P25800 156 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 CD34P28906 385 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 PTGFRP43088 359 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 NANOS3P60323 173 aaKnown RBP13.4□□□□□ -0.26
CLN3-211ENST00000564091 KRBOX4Q5JUW0 171 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 Q6P435 159 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 ZNF329Q86UD4 541 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 OR51A4Q8NGJ6 313 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 OR8J1Q8NGP2 316 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 OR13C9Q8NGT0 318 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 SPSB1Q96BD6 273 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 COQ2Q96H96 371 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 MBOAT4Q96T53 435 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 ENOPH1Q9UHY7 261 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 CLIC3O95833 236 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 NFYBP25208 207 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 CEACAM3P40198 252 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 PRRX1P54821 245 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 ATXN7L3Q14CW9 347 aaPredicted RBP13.39□□□□□ -0.27
CLN3-211ENST00000564091 C17orf58Q2M2W7 97 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 OSR2Q8N2R0 312 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 LINC00482Q8N8I6 264 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 OR4D6Q8NGJ1 314 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 CREB3L1Q96BA8 519 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 COMMD4Q9H0A8 199 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 PPIL3Q9H2H8 161 aaKnown RBP13.39□□□□□ -0.27
CLN3-211ENST00000564091 AP4S1Q9Y587 144 aa13.39□□□□□ -0.27
CLN3-211ENST00000564091 PSMB11A5LHX3 300 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 SLC33A1O00400 549 aaPredicted RBP13.38□□□□□ -0.27
CLN3-211ENST00000564091 DEGS1O15121 323 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 DUS4LO95620 317 aaKnown RBP13.38□□□□□ -0.27
CLN3-211ENST00000564091 IGHV3-7P01780 117 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 ISG15P05161 165 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 MNDAP41218 407 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 TMED1Q13445 227 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 ETV3LQ6ZN32 361 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 C18orf65Q6ZTR6 163 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 MRPL41Q8IXM3 137 aaKnown RBP13.38□□□□□ -0.27
CLN3-211ENST00000564091 RFKQ969G6 155 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 ZNF649Q9BS31 505 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 GABARAPL3Q9BY60 117 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 NEK6Q9HC98 313 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLN3-211ENST00000564091 PCDHGB5Q9Y5G0 923 aa13.38□□□□□ -0.27
CLN3-211ENST00000564091 COL7A1Q02388 2944 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 A0A087X0M5 115 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 A0A1B0GX30 115 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 M0QZK8 103 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 HSPB6O14558 160 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 MT-ND2P03891 347 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 CSN2P05814 226 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 FAM106CPP0CH98 169 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 VSIG8P0DPA2 414 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 EGFEM1PQ0D2K5 195 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 CCDC144NLQ6NUI1 221 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 OR13C3Q8NGS6 347 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 OR56B4Q8NH76 319 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 LEAP2Q969E1 77 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 RPEQ96AT9 228 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 RNFT2Q96EX2 444 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 HRASLS5Q96KN8 279 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 NOL4LQ96MY1 436 aaPredicted RBP13.37□□□□□ -0.27
CLN3-211ENST00000564091 OAZ3Q9UMX2 235 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 MOB4Q9Y3A3 225 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 HSPE1-MOB4S4R3N1 261 aa13.37□□□□□ -0.27
CLN3-211ENST00000564091 KBTBD11-OT1A0A1B0GTJ5 212 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A18PA6NE21 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A16PA6NEW6 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A20PA6NIJ5 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 ZNF729A6NN14 1252 aaPredicted RBP13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A9PA6NNJ1 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A12PA8MX19 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A5PA8MXJ8 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 SLC16A6O15403 523 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 SNRNP70P08621 437 aaKnown RBP13.36□□□□□ -0.27
CLN3-211ENST00000564091 HTR1AP08908 422 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 CCDC159P0C7I6 412 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A15PP0C7V4 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A13PP0C7W8 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A14PP0C7W9 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FAM90A24PP0C7X0 464 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 DIAPH2-AS1Q14236 149 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 HNF4GQ14541 408 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 CDK5R1Q15078 307 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 FDX2Q6P4F2 183 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 DRAM1Q8N682 238 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 CHST4Q8NCG5 386 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 OR9G1Q8NH87 305 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 KIRREL1Q96J84 757 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 OR6C3Q9NZP0 311 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 LINC00527Q9UJ94 153 aa13.36□□□□□ -0.27
CLN3-211ENST00000564091 DAPL1A0PJW8 107 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 SAC3D1A6NKF1 404 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 OR4C45A6NMZ5 311 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 OOSP1A8MZH6 123 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 J3QLW9 94 aa13.35□□□□□ -0.27
CLN3-211ENST00000564091 J3QRE1 110 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms