RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 C3orf33Q6P1S2 294 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 Q6ZN92 141 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 YTHDF3Q7Z739 585 aaKnown RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 FTMTQ8N4E7 242 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CCL4L1Q8NHW4 92 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 HAVCR2Q8TDQ0 301 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 DCAKDQ8WVC6 231 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TMEM54Q969K7 222 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 RCN3Q96D15 328 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZMYND19Q96E35 227 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 RBP7Q96R05 134 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SDHCQ99643 169 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PITPNM3Q9BZ71 974 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 HOXD1Q9GZZ0 328 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF442Q9H7R0 627 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 C12orf4Q9NQ89 552 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 EXOSC3Q9NQT5 275 aaKnown RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 EXD2Q9NVH0 621 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TAC3Q9UHF0 121 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MGAT4AQ9UM21 535 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ST3GAL6Q9Y274 331 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC22A7Q9Y694 548 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SDK1Q7Z5N4 2213 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CACNA1EQ15878 2313 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 COL5A1P20908 1838 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MUC6Q6W4X9 2439 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 A0A0C4DFX4 3053 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 H7C1H1 209 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 M0R1B8 84 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CRXO43186 299 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SSNA1O43805 119 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MGRN1O60291 552 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 KRT75O95678 551 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PGA4P0DJD7 388 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PGA3P0DJD8 388 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PGA5P0DJD9 388 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ERGP11308 486 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF17P17021 662 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 HRH1P35367 487 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 IFNGR2P38484 337 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MAGEA12P43365 314 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 OR1D4P47884 311 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 HOXA1P49639 335 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PDLIM4P50479 330 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TCL1AP56279 114 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF92Q03936 586 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 KRR1Q13601 381 aaKnown RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CLINT1Q14677 625 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TSNQ15631 228 aaKnown RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 WDR38Q5JTN6 314 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 N4BP2L1Q5TBK1 243 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 OLFML2AQ68BL7 652 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CNIH2Q6PI25 160 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CYHR1Q6ZMK1 362 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF627Q7L945 461 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 C10orf107Q8IVU9 208 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 NRMQ8IXM6 262 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 OR2D3Q8NGH3 330 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 OR6K3Q8NGY3 331 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MPLKIPQ8TAP9 179 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CASTOR1Q8WTX7 329 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 VOPP1Q96AW1 172 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 FGGYQ96C11 551 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF597Q96LX8 424 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PPP3R2Q96LZ3 170 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 Q96MT0 163 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 KCTD14Q9BQ13 255 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC29A3Q9BZD2 475 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PRSS22Q9GZN4 317 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TLNRD1Q9H1K6 362 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 TCEAL2Q9H3H9 227 aaPredicted RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 MAP1LC3AQ9H492 121 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CACYBPQ9HB71 228 aaKnown RBP4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 THYN1Q9P016 225 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 PRSS21Q9Y6M0 314 aa4.16□□□□□ -1.74
VPS35P1-201ENST00000563400 CABIN1Q9Y6J0 2220 aa4.15□□□□□ -1.74
VPS35P1-201ENST00000563400 XIRP2A4UGR9 3374 aa4.15□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM186AA6NE01 2351 aa4.15□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM240AA0A1B0GVK7 77 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 A0A1B0GX78 115 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 ZNF593O00488 134 aaPredicted RBP4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 SYNGR1O43759 233 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 LYPLA1O75608 230 aaPredicted RBP4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 GATBO75879 557 aaKnown RBP4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 OR5AL1P0C617 328 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 GGT1P19440 569 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 TCN2P20062 427 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 M6PRP20645 277 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 F8A1P23610 371 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 HTR1DP28221 377 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 IMPA1P29218 277 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 SLCO1A2P46721 670 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 CDKN2DP55273 166 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 PAX9P55771 341 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 PPP1CBP62140 327 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 TBPL1P62380 186 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 TNFRSF9Q07011 255 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 TMEM30BQ3MIR4 351 aa4.15□□□□□ -1.75
VPS35P1-201ENST00000563400 CHRFAM7AQ494W8 412 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms