RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 UBE2J1Q9Y385 318 aaPredicted RBP15.21■□□□□ 0.03
VPS35-202ENST00000561713 TRGV10A0A0A0MS01 117 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 PEX14O75381 377 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 HCKP08631 526 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 VSIG8P0DPA2 414 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 HTR1DP28221 377 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 CCR9P51686 369 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 DYNLT3P51808 116 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 ZSCAN26Q16670 478 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 SLC25A30Q5SVS4 291 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 MEDAGQ5VYS4 303 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 C11orf87Q6NUJ2 197 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 ABHD12Q8N2K0 398 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 PDCD1LG2Q9BQ51 273 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 COMMD4Q9H0A8 199 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 ZCCHC4Q9H5U6 513 aa15.2■□□□□ 0.02
VPS35-202ENST00000561713 SEBOXQ9HB31 216 aaPredicted RBP15.2■□□□□ 0.02
VPS35-202ENST00000561713 EXOGQ9Y2C4 368 aaKnown RBP15.2■□□□□ 0.02
VPS35-202ENST00000561713 ODAMA1E959 279 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 K7EIL1 84 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 SLC33A1O00400 549 aaPredicted RBP15.19■□□□□ 0.02
VPS35-202ENST00000561713 SH2D1BO14796 132 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 ZFPL1O95159 310 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 ERP29P30040 261 aaKnown RBP15.19■□□□□ 0.02
VPS35-202ENST00000561713 ZP1P60852 638 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 Q6P435 159 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 KCTD20Q7Z5Y7 419 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 TSEN15Q8WW01 171 aaKnown RBP15.19■□□□□ 0.02
VPS35-202ENST00000561713 WNT10AQ9GZT5 417 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 GAL3ST2Q9H3Q3 398 aa15.19■□□□□ 0.02
VPS35-202ENST00000561713 TMEM225BP0DP42 221 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 CD33P20138 364 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 PTGFRP43088 359 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 GLP1RP43220 463 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 GALEQ14376 348 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 RBM39Q14498 530 aaKnown RBP15.18■□□□□ 0.02
VPS35-202ENST00000561713 CDK5R1Q15078 307 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 KRBOX4Q5JUW0 171 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 HEPN1Q6WQI6 88 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 WFDC9Q8NEX5 89 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 OR51A2Q8NGJ7 313 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 RGP1Q92546 391 aaPredicted RBP15.18■□□□□ 0.02
VPS35-202ENST00000561713 NR1H4Q96RI1 486 aaPredicted RBP15.18■□□□□ 0.02
VPS35-202ENST00000561713 SLC29A1Q99808 456 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 ZNF649Q9BS31 505 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 ERVK13-1Q9NX77 482 aa15.18■□□□□ 0.02
VPS35-202ENST00000561713 FAM90A22PA8MWA6 464 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 SULT1B1O43704 296 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 IGHV3-7P01780 117 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 MT-ND2P03891 347 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 SOX2P48431 317 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 GTF2A1P52655 376 aaPredicted RBP15.17■□□□□ 0.02
VPS35-202ENST00000561713 OR52I1Q8NGK6 324 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 OR10K1Q8NGX5 313 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 APH1BQ8WW43 257 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 SLC25A33Q9BSK2 321 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 ZNF581Q9P0T4 197 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 DPM3Q9P2X0 92 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 PCDHGB5Q9Y5G0 923 aa15.17■□□□□ 0.02
VPS35-202ENST00000561713 IGLV1-47P01700 117 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 NFYBP25208 207 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 OR3A4PP47883 348 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 BDH1Q02338 343 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 KISS1Q15726 138 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 C17orf58Q2M2W7 97 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 HLA-DRB5Q30154 266 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 ZNF691Q5VV52 312 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 XAF1Q6GPH4 301 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 ZFP1Q6P2D0 407 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 C10orf99Q6UWK7 81 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 ZBTB49Q6ZSB9 765 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 SYS1Q8N2H4 156 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 OR5AK2Q8NH90 309 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 LEAP2Q969E1 77 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 OCSTAMPQ9BR26 566 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 FAM192AQ9GZU8 254 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 TAS2R4Q9NYW5 299 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 DHDHQ9UQ10 334 aa15.16■□□□□ 0.02
VPS35-202ENST00000561713 TMEM212A6NML5 194 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 SNTNA6NMZ2 147 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 H0YJX3 145 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 GABRPO00591 440 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 DEGS1O15121 323 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 LMO1P25800 156 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 LTC4SQ16873 150 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 PIGYQ3MUY2 71 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 ABCA11PQ4W5N1 156 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 PAN3Q58A45 887 aaKnown RBP15.15■□□□□ 0.02
VPS35-202ENST00000561713 TPTE2P1Q5T6R2 138 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 SAXO1Q8IYX7 474 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 OR13A1Q8NGR1 328 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 ZNF596Q8TC21 504 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 MRPL48Q96GC5 212 aaKnown RBP15.15■□□□□ 0.02
VPS35-202ENST00000561713 TAS2R3Q9NYW6 316 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 KIF25Q9UIL4 384 aa15.15■□□□□ 0.02
VPS35-202ENST00000561713 TRAV39A0A0B4J263 110 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 ALDOBP05062 364 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 CSN2P05814 226 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 LPLP06858 475 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 CD34P28906 385 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms