RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.1□□□□□ -0.15
SHMT2-232ENST00000557487 SLC25A45Q8N413 288 aa14.1□□□□□ -0.15
SHMT2-232ENST00000557487 OR6C1Q96RD1 312 aa14.1□□□□□ -0.15
SHMT2-232ENST00000557487 B4DEV8 164 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 H3BQ15 152 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 GEMIN2O14893 280 aaKnown RBP14.09□□□□□ -0.15
SHMT2-232ENST00000557487 F10P00742 488 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 SRP19P09132 144 aaKnown RBP14.09□□□□□ -0.15
SHMT2-232ENST00000557487 AADACP22760 399 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 NBL1P41271 181 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 CD81P60033 236 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 VAMP2P63027 116 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 NHLH1Q02575 133 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 OR8G1Q15617 311 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 TSPO2Q5TGU0 170 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 SPSB3Q6PJ21 355 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 SLC35E3Q7Z769 313 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 DPPA2Q7Z7J5 298 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 ST3GAL6Q9Y274 331 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 ZNF729A6NN14 1252 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-232ENST00000557487 S100A2P29034 98 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 RPS10P46783 165 aaKnown RBP14.09□□□□□ -0.15
SHMT2-232ENST00000557487 RBM11P57052 281 aaKnown RBP14.09□□□□□ -0.15
SHMT2-232ENST00000557487 TLE4Q04727 773 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 FOXO1Q12778 655 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 ZNF695Q8IW36 515 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 MR1Q95460 341 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 IL22RA2Q969J5 263 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 TP53RKQ96S44 253 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 GGACTQ9BVM4 153 aa14.09□□□□□ -0.15
SHMT2-232ENST00000557487 OR6C6A6NF89 314 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 PROB1E7EW31 1015 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 LIFP15018 202 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 UBE2KP61086 200 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 RAC1P63000 192 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 ACER2Q5QJU3 275 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 TMEM252Q8N6L7 170 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 ZIC4Q8N9L1 334 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 CPT1CQ8TCG5 803 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 TVP23CQ96ET8 276 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 PARPBPQ9NWS1 579 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 TREM2Q9NZC2 230 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 DKKL1Q9UK85 242 aa14.08□□□□□ -0.16
SHMT2-232ENST00000557487 NOSIPQ9Y314 301 aaKnown RBP14.08□□□□□ -0.16
SHMT2-232ENST00000557487 UBE2J1Q9Y385 318 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-232ENST00000557487 LOC102723996A0A087X1L8 192 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 TRAV1-1A0A0B4J248 108 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 IGSF23A1L1A6 192 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 NKX2-6A6NCS4 301 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 FAM24AA6NFZ4 105 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 HSD17B6O14756 317 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 TIAF1O95411 115 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 LCATP04180 440 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 TAGLN2P37802 199 aaKnown RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 PCBD1P61457 104 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 KHDC3LQ587J8 217 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 MEX3BQ6ZN04 569 aaKnown RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 PPP1R3BQ86XI6 285 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF610Q8N9Z0 462 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 Q8NFD4 153 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 OR11L1Q8NGX0 322 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 DNASE2BQ8WZ79 361 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 RAB39BQ96DA2 213 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 RARRES2Q99969 163 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 NIPSNAP3BQ9BS92 247 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 WDR54Q9H977 334 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 NCOA6Q14686 2063 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 ELOA3CA0A087WX78 387 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 IGKV1-12A0A0C4DH73 117 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 SEC14L6B5MCN3 397 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 IGKV1D-12P01611 117 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 PIGYQ3MUY2 71 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 AKR1C8PQ5T2L2 129 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 PRAMEF20Q5VT98 475 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 RAET1LQ5VY80 246 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF574Q6ZN55 896 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 OR2AE1Q8NHA4 323 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 EDARADDQ8WWZ3 215 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 TMEM38BQ9NVV0 291 aa14.07□□□□□ -0.16
SHMT2-232ENST00000557487 GAR1Q9NY12 217 aaKnown RBP14.07□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF816-ZNF321PA0A0X1KG74 233 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 hCG_38984A0A1B0GV85 526 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF724A8MTY0 619 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 RPL36A-HNRNPH2H7BZ11 118 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 GPR37O15354 613 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 DFFBO76075 338 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 SCAF4O95104 1147 aaKnown RBP14.06□□□□□ -0.16
SHMT2-232ENST00000557487 TK1P04183 234 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 CTXN2P0C2S0 81 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 VDAC1P21796 283 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 CLDN15P56746 228 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 ID3Q02535 119 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 IL24Q13007 206 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF429Q86V71 674 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 SELENOHQ8IZQ5 122 aaKnown RBP14.06□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF700Q9H0M5 742 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 ZNF442Q9H7R0 627 aa14.06□□□□□ -0.16
SHMT2-232ENST00000557487 BCAT2O15382 392 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-232ENST00000557487 GLIPR1P48060 266 aa14.05□□□□□ -0.16
SHMT2-232ENST00000557487 ELOBQ15370 118 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms