RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 CDIPTO14735 213 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 SLC22A5O76082 557 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 HLA-GP17693 338 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 IL13RA1P78552 427 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 RBM39Q14498 530 aaKnown RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 C2orf68Q2NKX9 166 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 SUMF2Q8NBJ7 301 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 UXS1Q8NBZ7 420 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 DMRTA2Q96SC8 542 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 ZNF2Q9BSG1 426 aaPredicted RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 RTBDNQ9BSG5 229 aaPredicted RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 PAIP2BQ9ULR5 123 aaKnown RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 MGAT4AQ9UM21 535 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 TRBV6-6A0A0A6YYG2 114 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 POM121CA8CG34 1229 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 G3V3Q6 166 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 GOSR2O14653 212 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 DUS4LO95620 317 aaKnown RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 IGHV3-13P01766 116 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 GRPP07492 148 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 AKR1C4P17516 323 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 DUSP1P28562 367 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 CD34P28906 385 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 CCKARP32238 428 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 LAMTOR1Q6IAA8 161 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 Q6P435 159 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 SLC22A25Q6T423 547 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 Q6ZPA2 131 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 C11orf53Q8IXP5 236 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 POC1AQ8NBT0 407 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 OR11H4Q8NGC9 324 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 RND1Q92730 232 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 CHIAQ9BZP6 476 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 HES4Q9HCC6 221 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 CHMP1AQ9HD42 196 aaPredicted RBP12.48□□□□□ -0.41
VPS33B-205ENST00000556096 Q9N2K0 584 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 PLSCR3Q9NRY6 295 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 FZR1Q9UM11 496 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 BOLA1Q9Y3E2 137 aa12.48□□□□□ -0.41
VPS33B-205ENST00000556096 TRAV24A0A0B4J272 114 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 RGS13O14921 159 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 DEGS1O15121 323 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 RGS11O94810 467 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 H2BFSP57053 126 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 RPS23P62266 143 aaKnown RBP12.47□□□□□ -0.41
VPS33B-205ENST00000556096 ZNF146Q15072 292 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 SPIN3Q5JUX0 258 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 LPCAT3Q6P1A2 487 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 C9orf62Q8N4C0 152 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 PRR7Q8TB68 274 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 TMEM230Q96A57 120 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 PHB2Q99623 299 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 OPN4Q9UHM6 478 aa12.47□□□□□ -0.41
VPS33B-205ENST00000556096 TRGV8A0A0C4DH27 118 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 F5H5P2 479 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 SNAPC5O75971 98 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 NXPH2O95156 264 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 PPP3CBP16298 524 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 CD40P25942 277 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 SRSF4Q08170 494 aaKnown RBP12.46□□□□□ -0.41
VPS33B-205ENST00000556096 ESPL1Q14674 2120 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 MSMPQ1L6U9 139 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 SHEQ5VZ18 495 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 ALKBH2Q6NS38 261 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 C22orf34Q6ZV56 151 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 TMEM246Q9BRR3 403 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 DPCDQ9BVM2 203 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-205ENST00000556096 WDR13Q9H1Z4 485 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 SLA2Q9H6Q3 261 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 MSL2Q9HCI7 577 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 TREM2Q9NZC2 230 aa12.46□□□□□ -0.41
VPS33B-205ENST00000556096 IGLV3-9A0A075B6K5 115 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 A0A0B4J2A0 478 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 SH2D1BO14796 132 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 SIX6O95475 246 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 SFT2D2O95562 160 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 CTSDP07339 412 aaPredicted RBP12.45□□□□□ -0.42
VPS33B-205ENST00000556096 PGAM2P15259 253 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 VAMP1P23763 118 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 MDH2P40926 338 aaKnown RBP12.45□□□□□ -0.42
VPS33B-205ENST00000556096 CD200P41217 278 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 CASP6P55212 293 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 Q5BKY6 102 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 LY6G6FQ5SQ64 297 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 C11orf88Q6PI97 169 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 FIP1L1Q6UN15 594 aaKnown RBP12.45□□□□□ -0.42
VPS33B-205ENST00000556096 OR5M8Q8NGP6 311 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 NEK7Q8TDX7 302 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 TMEM171Q8WVE6 324 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 GON7Q9BXV9 100 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 TMPRSS13Q9BYE2 586 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 SHPKQ9UHJ6 478 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 C14orf166Q9Y224 244 aaKnown RBP12.45□□□□□ -0.42
VPS33B-205ENST00000556096 MEMO1Q9Y316 297 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 KIR2DS1A0A191URI9 304 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 HS3ST1O14792 307 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 PTBP3O95758 552 aaKnown RBP12.45□□□□□ -0.42
VPS33B-205ENST00000556096 PLA2G2AP14555 144 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 ZNF44P15621 663 aa12.45□□□□□ -0.42
VPS33B-205ENST00000556096 GLRA1P23415 457 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms