RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 ZNF154Q13106 437 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 GRK1Q15835 563 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 TERB2Q8NHR7 220 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 GTF3AQ92664 365 aaKnown RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 ADAT1Q9BUB4 502 aaKnown RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 RTL8AQ9BWD3 113 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 FXYD6Q9H0Q3 95 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 SAV1Q9H4B6 383 aaPredicted RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 ELL3Q9HB65 397 aaPredicted RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 ELOVL5Q9NYP7 299 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 ANXA10Q9UJ72 324 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 IGLV3-9A0A075B6K5 115 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 ABCD4O14678 606 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 THBDP07204 575 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 FUT3P21217 361 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 FPR2P25090 351 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 HOXC12P31275 282 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 SNRPD2P62316 118 aaKnown RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 SUPT4H1P63272 117 aaKnown RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 DHRS2Q13268 280 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 HAGHLQ6PII5 290 aaPredicted RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 BRICD5Q6PL45 260 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 RBPMSQ93062 196 aaKnown RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 GPN1Q9HCN4 374 aaPredicted RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 ZNF69Q9UC07 566 aa7.55□□□□□ -1.2
TDP1-210ENST00000554976 RAI1Q7Z5J4 1906 aaPredicted RBP7.55□□□□□ -1.2
TDP1-210ENST00000554976 GIPP09681 153 aaPredicted RBP7.54□□□□□ -1.2
TDP1-210ENST00000554976 PPP3CBP16298 524 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 MEOX2P50222 304 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 FAM27E3Q08E93 113 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 ARFRP1Q13795 201 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 PDCD1Q15116 288 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 MPPED2Q15777 294 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 NKAPLQ5M9Q1 402 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 DCAF12L2Q5VW00 463 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 GFRALQ6UXV0 394 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 LYG2Q86SG7 212 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 BATF2Q8N1L9 274 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 OR2AK2Q8NG84 335 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 HYLS1Q96M11 299 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 ST6GALNAC5Q9BVH7 336 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 C9orf170A2RU37 121 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 PRRG2O14669 202 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 GLAP06280 429 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 AMY2BP19961 511 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 PPP1R1AQ13522 171 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 ZNF146Q15072 292 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 SURF2Q15527 256 aaPredicted RBP7.54□□□□□ -1.2
TDP1-210ENST00000554976 SCGB2B2Q4G0G5 96 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 ANKRD39Q53RE8 183 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 PCSK4Q6UW60 755 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 OR8H3Q8N146 312 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 ZNF565Q8N9K5 539 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 POC1AQ8NBT0 407 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 OR5T2Q8NGG2 359 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 OR5H2Q8NGV7 314 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 MRPL30Q8TCC3 161 aaKnown RBP7.54□□□□□ -1.2
TDP1-210ENST00000554976 MARCH1Q8TCQ1 289 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 PLK3Q9H4B4 646 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 Q9N2K0 584 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 TRAPPC2LH3BP13 241 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 IGHV3-13P01766 116 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 CSN2P05814 226 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 UBE2MP61081 183 aaKnown RBP7.54□□□□□ -1.2
TDP1-210ENST00000554976 C20orf204Q6ZNR8 217 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 CLRN3Q8NCR9 226 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 MITD1Q8WV92 249 aa7.54□□□□□ -1.2
TDP1-210ENST00000554976 UBE2QL1A1L167 161 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 TUBAL3A6NHL2 446 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 SSNA1O43805 119 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 NDUFS6O75380 124 aaKnown RBP7.53□□□□□ -1.2
TDP1-210ENST00000554976 HERPUD1Q15011 391 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 LRP11Q86VZ4 500 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 FAM58AQ8N1B3 248 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 SUMF2Q8NBJ7 301 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 NUP37Q8NFH4 326 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 CCDC107Q8WV48 283 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 TMEM171Q8WVE6 324 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 ASB13Q8WXK3 278 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 CMSS1Q9BQ75 279 aaKnown RBP7.53□□□□□ -1.2
TDP1-210ENST00000554976 OPN4Q9UHM6 478 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 MEMO1Q9Y316 297 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 DSPP15924 2871 aaKnown RBP7.53□□□□□ -1.2
TDP1-210ENST00000554976 POM121CA8CG34 1229 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 SLC33A1O00400 549 aaPredicted RBP7.53□□□□□ -1.2
TDP1-210ENST00000554976 CD8AP01732 235 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 RLN1P04808 185 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 SFTPCP11686 197 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 LMO1P25800 156 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 CD200P41217 278 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 ZNF83P51522 516 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 SPRNQ5BIV9 151 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 HIST1H2AAQ96QV6 131 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 MICU1Q9BPX6 476 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 VKORC1Q9BQB6 163 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 TMPRSS13Q9BYE2 586 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 CXXC4Q9H2H0 198 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 RANBP3Q9H6Z4 567 aaPredicted RBP7.53□□□□□ -1.2
TDP1-210ENST00000554976 TMEM100Q9NV29 134 aa7.53□□□□□ -1.2
TDP1-210ENST00000554976 TREM2Q9NZC2 230 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms