RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 FAM90A18PA6NE21 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A16PA6NEW6 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 DNAJC9-AS1A6NH13 148 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A20PA6NIJ5 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A8PA6NJQ4 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A7PA6NKC0 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A22PA8MWA6 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A12PA8MX19 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A5PA8MXJ8 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A23PA8MXZ1 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 NPFFO15130 113 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 RGS9O75916 674 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 HTR3BO95264 441 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 PAHP00439 452 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 MAS1P04201 325 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 UCHL1P09936 223 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A15PP0C7V4 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A13PP0C7W8 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A14PP0C7W9 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 FAM90A24PP0C7X0 464 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 ZNF728P0DKX0 622 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 RBM11P57052 281 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 RPL15P61313 204 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 UBA52P62987 128 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 ZNF273Q14593 569 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 AWAT2Q6E213 333 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 UNQ9370/PRO34162Q6UXP9 181 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 TRAPPC6BQ86SZ2 158 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 PHC2Q8IXK0 858 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 OR4M1Q8NGD0 313 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 OR13D1Q8NGV5 346 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 SSMEM1Q8WWF3 244 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 SGCDQ92629 289 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 TNFRSF14Q92956 283 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 CST11Q9H112 138 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 TAS2R3Q9NYW6 316 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 OR6C3Q9NZP0 311 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 ING4Q9UNL4 249 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 ST3GAL6Q9Y274 331 aa11.79□□□□□ -0.52
CCDC88C-207ENST00000554051 A0A0G2JK05 382 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 C17orf98A8MV24 154 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 RNASEK-C17orf49H0YIS7 233 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 SLC33A1O00400 549 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 RRP9O43818 475 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 CLPXO76031 633 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 RNASE1P07998 156 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 SERPINA2P20848 420 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 GALP22466 123 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 DUSP1P28562 367 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 ACTG1P63261 375 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 KCTD21Q4G0X4 260 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 PAN3Q58A45 887 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 RUSC1-AS1Q66K80 236 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 Q6P435 159 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 Q6YL49 198 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 CEACAM19Q7Z692 300 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 ZDHHC22Q8N966 263 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 OR4S1Q8NGB4 309 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 MUL1Q969V5 352 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 BARHL1Q9BZE3 327 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 CHST6Q9GZX3 395 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 DPAGT1Q9H3H5 408 aa11.78□□□□□ -0.52
CCDC88C-207ENST00000554051 A0A1W2PPK0 400 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 ODAMA1E959 279 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 MAGEA13PA6NCF6 341 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 PIN1P1O15428 100 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 OR7C1O76099 320 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 CDRT1O95170 752 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 PSMD7P51665 324 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 SCN1BQ07699 218 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 DEFB112Q30KQ8 113 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 SLC22A6Q4U2R8 563 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 KRBOX4Q5JUW0 171 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 OR52W1Q6IF63 320 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 GLIPR1L1Q6UWM5 242 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 RNF144BQ7Z419 303 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 BCL6BQ8N143 479 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 OR6M1Q8NGM8 313 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF48Q96MX3 618 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 MDFIQ99750 246 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 PPA2Q9H2U2 334 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 NDUFB11Q9NX14 153 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 LRRC42Q9Y546 428 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 SESN1Q9Y6P5 492 aa11.77□□□□□ -0.53
CCDC88C-207ENST00000554051 IGHV1-8P0DP01 117 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 CALCBP10092 127 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 CCL3L1P16619 93 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 SRMP19623 302 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 SAA4P35542 130 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 MAP2K4P45985 399 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 DLX6P56179 175 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 LGALS4P56470 323 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 RBM39Q14498 530 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 ATXN7L3Q14CW9 347 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 AANATQ16613 207 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 PIGYQ3MUY2 71 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 UBE2UQ5VVX9 321 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF773Q6PK81 442 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 LYPD6Q86Y78 171 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 OR10K1Q8NGX5 313 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms