RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MRGPRDQ8TDS7 321 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 MITD1Q8WV92 249 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 CHRNA10Q9GZZ6 450 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 SCN8AQ9UQD0 1980 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 TUBAL3A6NHL2 446 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 HEXAP06865 529 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 OR2A2Q6IF42 318 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 LYZL2Q7Z4W2 148 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 OR5C1Q8NGR4 320 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 TIMD4Q96H15 378 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 TAAR3PQ9P1P4 343 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 TMED3Q9Y3Q3 217 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 TMEM30CPA0ZSE6 113 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 GFRA3O60609 400 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 ZNF17P17021 662 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 MST1P26927 711 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 DHODHQ02127 395 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 CLEC12BQ2HXU8 276 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 LRRC75AQ8NAA5 344 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 MSI2Q96DH6 328 aaKnown RBP14.2□□□□□ -0.14
CUX1-213ENST00000549414 SLC2A9Q9NRM0 540 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 TREM2Q9NZC2 230 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 CST4P01036 141 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 HMGN3Q15651 99 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 SPINK9Q5DT21 86 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 OR10P1Q8NGE3 313 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 MRPS24Q96EL2 167 aaKnown RBP14.2□□□□□ -0.14
CUX1-213ENST00000549414 RSPO3Q9BXY4 272 aaPredicted RBP14.2□□□□□ -0.14
CUX1-213ENST00000549414 RASL12Q9NYN1 266 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 MYO18BQ8IUG5 2567 aa14.2□□□□□ -0.14
CUX1-213ENST00000549414 CTSDP07339 412 aaPredicted RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 C1orf100Q5SVJ3 147 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 FAM122CQ6P4D5 195 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 ADGRG7Q96K78 797 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 DHRS9Q9BPW9 319 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 PSG11Q9UQ72 335 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 ERVH48-1M5A8F1 160 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 PPYP01298 95 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 EFNB1P98172 346 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 LFNGQ8NES3 379 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 RPUSD4Q96CM3 377 aaKnown RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 MSL2Q9HCI7 577 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 CCL28Q9NRJ3 127 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 CACNG5Q9UF02 275 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 MPDZO75970 2070 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 OR5B21A6NL26 309 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 M0R1X1 148 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 SOX15O60248 233 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 ISG15P05161 165 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 EIF2S3P41091 472 aaKnown RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 TEX30Q5JUR7 227 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 MDP1Q86V88 176 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 FGF11Q92914 225 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 MS4A7Q9GZW8 240 aaPredicted RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 ZNF239Q16600 458 aaKnown RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 FAHD2BQ6P2I3 314 aaPredicted RBP14.19□□□□□ -0.14
CUX1-213ENST00000549414 GAPTQ8N292 157 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 OR13G1Q8NGZ3 307 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 FAHD2AQ96GK7 314 aa14.19□□□□□ -0.14
CUX1-213ENST00000549414 CENPFP49454 3210 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 hCG_1809904A0A1W2PP81 198 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PPE2 198 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PR64 198 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PRV1 198 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 DNPH1O43598 174 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 PSMB3P49720 205 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 H2BFSP57053 126 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 TBC1D26Q86UD7 250 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 LRRC29Q8WV35 223 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 STRAPQ9Y3F4 350 aaKnown RBP14.18□□□□□ -0.14
CUX1-213ENST00000549414 CHCHD2Q9Y6H1 151 aaPredicted RBP14.18□□□□□ -0.14
CUX1-213ENST00000549414 ZNF407Q9C0G0 2248 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 THADAQ6YHU6 1953 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PNV4 684 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 RNASEK-C17orf49H0YIS7 233 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 METTL15P1P0C7V9 234 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 MPGP29372 298 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 GPHA2Q96T91 129 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 OR2J1Q9GZK6 312 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 UBE2L5PA0A1B0GUS4 154 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 AQP7O14520 342 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 ZBTB25P24278 435 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 PPP1R32Q7Z5V6 425 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 OR2C3Q8N628 320 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 ZNF485Q8NCK3 441 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 POC1BQ8TC44 478 aa14.18□□□□□ -0.14
CUX1-213ENST00000549414 UBE2V2Q15819 145 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 Q3ZCU0 254 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 HOGA1Q86XE5 327 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 PTX4Q96A99 478 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 MPC1Q9Y5U8 109 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 A0A0U1RQV5 110 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 SIGLEC5O15389 551 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 S1PR3Q99500 378 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 HEATR5AQ86XA9 2040 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 TRIM77I1YAP6 450 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 ZP3P21754 424 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 KHDC1LQ5JSQ8 128 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 ZNF787Q6DD87 383 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 Q8IYB0 196 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms