RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	C19orf12	Q9NSK7	152 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	CABIN1	Q9Y6J0	2220 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	PITX3	O75364	302 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	RCC1	P18754	421 aa	Predicted RBP	11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	SRSF3	P84103	164 aa	Known RBP	11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	RHEB	Q15382	184 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	GUK1	Q16774	197 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	FAM219A	Q8IW50	185 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	LINC00518	Q8N0U6	118 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	SLC35G3	Q8N808	338 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	CPEB3	Q8NE35	698 aa	Known RBP	11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	OR56B2P	Q8NGI1	322 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	ABHD3	Q8WU67	409 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	PKIB	Q9C010	78 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	KCNJ16	Q9NPI9	418 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669	CEP290	O15078	2479 aa		11.23	□□□□□ -0.61
CPSF7-223	ENST00000544669		A0A0G2JMM0	328 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669		A0A1W2PPB8	328 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669		A0A1W2PRS3	328 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	KIR3DP1	A8MWS1	328 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	MT-ND4L	P03901	98 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	PATE4	P0C8F1	98 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	UCP1	P25874	307 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	MDH2	P40926	338 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	HAAO	P46952	286 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	LHX2	P50458	406 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	SPIN3	Q5JUX0	258 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	TMEM88	Q6PEY1	159 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	MOB1B	Q7L9L4	216 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669		Q8IYB0	196 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	OR5D13	Q8NGL4	314 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	PSMF1	Q92530	271 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	BOD1	Q96IK1	185 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	CDX2	Q99626	313 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	SMIM3	Q9BZL3	60 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	EGLN1	Q9GZT9	426 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	EIF5A2	Q9GZV4	153 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	HIPK2	Q9H2X6	1198 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	TMEM231	Q9H6L2	316 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	IFT22	Q9H7X7	185 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	SLC7A10	Q9NS82	523 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	DEPP	Q9NTK1	212 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	TREM2	Q9NZC2	230 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	RCL1	Q9Y2P8	373 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	REV3L	O60673	3130 aa		11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669	ASCC3	Q8N3C0	2202 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-223	ENST00000544669		H0Y980	276 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	KLRC4-KLRK1	H3BQV0	150 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	WRB	O00258	174 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	MSTN	O14793	375 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	TUSC2	O75896	110 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	DFFB	O76075	338 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	GNRHR	P30968	328 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	APLNR	P35414	380 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	NPBWR1	P48145	328 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	GNG3	P63215	75 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	ZNF616	Q08AN1	781 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	MRPL49	Q13405	166 aa	Known RBP	11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	MIDN	Q504T8	468 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	TBC1D26	Q86UD7	250 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	CALHM1	Q8IU99	346 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	DMBX1	Q8NFW5	382 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	OR1J1	Q8NGS3	322 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	ERGIC1	Q969X5	290 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	SPRY4	Q9C004	299 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	SLC35B3	Q9H1N7	401 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	SAV1	Q9H4B6	383 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	LYRM2	Q9NU23	88 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	FAM96B	Q9Y3D0	163 aa		11.21	□□□□□ -0.61
CPSF7-223	ENST00000544669	C5orf49	A4QMS7	147 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	C1orf196	B1AJZ1	125 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	PATE3	B3GLJ2	98 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	FAM157A	C9JC47	383 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	SS18L1	O75177	396 aa	Predicted RBP	11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	HBE1	P02100	147 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	OR8U9	P0C7N5	309 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	CLDN18	P56856	261 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZXDA	P98168	799 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	IL24	Q13007	206 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	CBLN2	Q8IUK8	224 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZNF561	Q8N587	486 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	FGFBP3	Q8TAT2	258 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	NEK7	Q8TDX7	302 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZNF845	Q96IR2	970 aa	Predicted RBP	11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	AKR1E2	Q96JD6	320 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669	FER1L6-AS2	Q96M78	137 aa		11.21	□□□□□ -0.62
CPSF7-223	ENST00000544669		A0A1B0GU03	582 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	ZNF732	B4DXR9	585 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	NEURL1	O76050	574 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	BCL3	P20749	454 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	CD200	P41217	278 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	RPS18	P62269	152 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	S100A12	P80511	92 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	ID3	Q02535	119 aa		11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	MEX3B	Q6ZN04	569 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-223	ENST00000544669	SELENOH	Q8IZQ5	122 aa	Known RBP	11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 47 ms