RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RTN4RL2Q86UN3 420 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 OR2G2Q8NGZ5 317 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 OR56B4Q8NH76 319 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 CAPSLQ8WWF8 208 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 PP6455Q8WZ26 134 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 EME1Q96AY2 570 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 KIRREL1Q96J84 757 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 WWC2-AS2Q96NR7 200 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 OPALINQ96PE5 141 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 CIB1Q99828 191 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 PRRG3Q9BZD7 231 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 COMMD4Q9H0A8 199 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 GAL3ST2Q9H3Q3 398 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 FRRS1LQ9P0K9 344 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 WARS2Q9UGM6 360 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 MOB4Q9Y3A3 225 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 HSPE1-MOB4S4R3N1 261 aa12.22□□□□□ -0.45
CLSTN3-213ENST00000541953 LYSTQ99698 3801 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 A0A1W2PPI3 338 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A18PA6NE21 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A16PA6NEW6 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A20PA6NIJ5 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 LINC01548A6NM66 108 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A9PA6NNJ1 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A12PA8MX19 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A5PA8MXJ8 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 HSPB6O14558 160 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 SULT1C4O75897 302 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 KDM4BO94953 1096 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 DUS4LO95620 317 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM107AO95990 144 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A15PP0C7V4 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A13PP0C7W8 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A14PP0C7W9 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 FAM90A24PP0C7X0 464 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 UBCP0CG48 685 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 NFYBP25208 207 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 PTGFRP43088 359 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 CDC42P60953 191 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 OR52W1Q6IF63 320 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 AMIGO2Q86SJ2 522 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 OR13A1Q8NGR1 328 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 OR13C9Q8NGT0 318 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 MBOAT4Q96T53 435 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 P2RX4Q99571 388 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 ADI1Q9BV57 179 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 GABARAPL1Q9H0R8 117 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 TAS2R3Q9NYW6 316 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 ZNF581Q9P0T4 197 aa12.21□□□□□ -0.45
CLSTN3-213ENST00000541953 EPPK1P58107 5090 aaKnown RBP12.21□□□□□ -0.46
CLSTN3-213ENST00000541953 G3V2T6 193 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 SERPINA3P01011 423 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 CGB3P0DN86 165 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 CGB7P0DN87 165 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 ZNF44P15621 663 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 KPNB1Q14974 876 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 ATP6AP1Q15904 470 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 KRBOX4Q5JUW0 171 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 NKAPLQ5M9Q1 402 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 LCNL1Q6ZST4 164 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 LHFPL2Q6ZUX7 228 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 UTS2BQ765I0 119 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 DRAM1Q8N682 238 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 C5orf56Q8N8D9 126 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 C10orf35Q96D05 121 aa12.2□□□□□ -0.46
CLSTN3-213ENST00000541953 TRAV39A0A0B4J263 110 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 H0YHG0 523 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 TOR1AO14656 332 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 SH2D1BO14796 132 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 GYG2O15488 501 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 CSN2P05814 226 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 HOXB6P17509 224 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 GLP1RP43220 463 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 ZP1P60852 638 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 HNF4GQ14541 408 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 DEFB136Q30KP8 78 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 KLHL30-AS1Q8NEE0 82 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 CCDC54Q8NEL0 328 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 TFAP2CQ92754 450 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 TOMM40LQ969M1 308 aa12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-213ENST00000541953 DNAH1Q9P2D7 4330 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 A0A1W2PPE3 182 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 E9PQ18 207 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 J3QRE1 110 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 CLIC3O95833 236 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 CYB5AP00167 134 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 ZNF20P17024 532 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 PRKACBP22694 351 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 CEACAM3P40198 252 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 GNG10P50151 68 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 LUMP51884 338 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 LTC4SQ16873 150 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 FAM53AQ6NSI3 398 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 OR4D6Q8NGJ1 314 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 PLPPR1Q8TBJ4 325 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 SPSB1Q96BD6 273 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 RAX2Q96IS3 184 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 RIBC2Q9H4K1 309 aa12.18□□□□□ -0.46
CLSTN3-213ENST00000541953 CALYQ9NYX4 217 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms