RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 STPG2Q8N412 459 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 BHLHE23Q8NDY6 225 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 NANPQ8TBE9 248 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 RBM14Q96PK6 669 aaKnown RBP11.77□□□□□ -0.52
RTN3-210ENST00000540798 OR51I2Q9H344 312 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 NAA60Q9H7X0 242 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 METTL8Q9H825 291 aaKnown RBP11.77□□□□□ -0.52
RTN3-210ENST00000540798 RHOFQ9HBH0 211 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 Q9N2K0 584 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 SDHAF2Q9NX18 166 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 IL36RNQ9UBH0 155 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 TUBD1Q9UJT1 453 aa11.77□□□□□ -0.52
RTN3-210ENST00000540798 TM4SF5O14894 197 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 RNF224P0DH78 156 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 COX5AP20674 150 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 RBMXP38159 391 aaKnown RBP11.77□□□□□ -0.53
RTN3-210ENST00000540798 LUMP51884 338 aaPredicted RBP11.77□□□□□ -0.53
RTN3-210ENST00000540798 PIGPP57054 158 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 GNG3P63215 75 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 TMEM187Q14656 261 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 ALKBH2Q6NS38 261 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 BATF2Q8N1L9 274 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 DCUN1D4Q92564 292 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 AQP10Q96PS8 301 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 TRIB1Q96RU8 372 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 KCNMB2Q9Y691 235 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 ZNF891A8MT65 544 aaPredicted RBP11.77□□□□□ -0.53
RTN3-210ENST00000540798 CELA3BP08861 270 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 TGFBR3Q03167 851 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 BEX5Q5H9J7 111 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 FAM76BQ5HYJ3 339 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 PDZD9Q8IXQ8 264 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 EIF4E3Q8N5X7 224 aaKnown RBP11.77□□□□□ -0.53
RTN3-210ENST00000540798 OR5AC2Q9NZP5 309 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 DOCK7Q96N67 2140 aa11.77□□□□□ -0.53
RTN3-210ENST00000540798 TRBV6-6A0A0A6YYG2 114 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 KIR2DL2P43627 348 aaPredicted RBP11.76□□□□□ -0.53
RTN3-210ENST00000540798 IL13RA2Q14627 380 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 RTP5Q14D33 572 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 INO80CQ6PI98 192 aaPredicted RBP11.76□□□□□ -0.53
RTN3-210ENST00000540798 WNT2BQ93097 391 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 BARX1Q9HBU1 254 aaPredicted RBP11.76□□□□□ -0.53
RTN3-210ENST00000540798 CYTL1Q9NRR1 136 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 DNAJB11Q9UBS4 358 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 POM121CA8CG34 1229 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 NAAAQ02083 359 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 RAB32Q13637 225 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 OR2T2Q6IF00 324 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 DMXL1Q9Y485 3027 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 ZNF292O60281 2723 aa11.76□□□□□ -0.53
RTN3-210ENST00000540798 A8MXK9 166 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 KCNAB3O43448 404 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 ZNF205O95201 554 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 FGF2P09038 288 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 HOXB5P09067 269 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 RD3LP0DJH9 198 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 CEACAM1P13688 526 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 KCNJ3P48549 501 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 DEFB109BQ30KR1 87 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 HAGHLQ6PII5 290 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 GCNT2Q8N0V5 402 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 C9orf106Q8NAJ2 232 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 C1orf162Q8NEQ5 155 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 ZNF471Q9BX82 626 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 SUCNR1Q9BXA5 334 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 SLC2A9Q9NRM0 540 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 CACNA1GO43497 2377 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 ESPL1Q14674 2120 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 PET100P0DJ07 73 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 AADACP22760 399 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 GLP1RP43220 463 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 IGFL3Q6UXB1 125 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 HSD17B13Q7Z5P4 300 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 RTN4IP1Q8WWV3 396 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 TOMM40LQ969M1 308 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 SARAFQ96BY9 339 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 C18orf12Q96KH6 178 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 MICU1Q9BPX6 476 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 SPACA1Q9HBV2 294 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 FAM86C1Q9NVL1 165 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 MEMO1Q9Y316 297 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 CA6P23280 308 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 PPP1CBP62140 327 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 ZNF124Q15973 351 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 ZNF880Q6PDB4 577 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 SLC16A13Q7RTY0 426 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 WDR86Q86TI4 376 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 SHARPINQ9H0F6 387 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 COA4Q9NYJ1 87 aa11.75□□□□□ -0.53
RTN3-210ENST00000540798 KLF2Q9Y5W3 355 aaPredicted RBP11.75□□□□□ -0.53
RTN3-210ENST00000540798 LOC400499M0QZD8 3231 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 MSGN1A6NI15 193 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 J3QT63 122 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 PPYP01298 95 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 NUP62P37198 522 aaPredicted RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 UBE2NP61088 152 aaKnown RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 MRPL49Q13405 166 aaKnown RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 ACSF3Q4G176 576 aaPredicted RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 GGNBP1Q5YKI7 109 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 LDLRAD3Q86YD5 345 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms