RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 MT-ND2P03891 347 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 HTR1AP08908 422 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 OCM2P0CE71 109 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 OCMP0CE72 109 aaPredicted RBP6.74□□□□□ -1.33
USP28-203ENST00000537490 ZNF44P15621 663 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 ZNF19P17023 458 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 BRS3P32247 399 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 CCR9P51686 369 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 SCN1BQ07699 218 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 ALKBH1Q13686 389 aaKnown RBP6.74□□□□□ -1.33
USP28-203ENST00000537490 KPNB1Q14974 876 aaKnown RBP6.74□□□□□ -1.33
USP28-203ENST00000537490 C17orf58Q2M2W7 97 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 HLA-DRB5Q30154 266 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 TPTE2P1Q5T6R2 138 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 KCTD20Q7Z5Y7 419 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 OR13C3Q8NGS6 347 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 OR13C9Q8NGT0 318 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 ZNF596Q8TC21 504 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 TRUB1Q8WWH5 349 aaKnown RBP6.74□□□□□ -1.33
USP28-203ENST00000537490 MYDGFQ969H8 173 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 PELI1Q96FA3 418 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 RBM14Q96PK6 669 aaKnown RBP6.74□□□□□ -1.33
USP28-203ENST00000537490 GAL3ST2Q9H3Q3 398 aa6.74□□□□□ -1.33
USP28-203ENST00000537490 A0A087X0M5 115 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 A0A1B0GX30 115 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 BUB1B-PAK6H3BSN5 160 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 SLC33A1O00400 549 aaPredicted RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 TOR1AO14656 332 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 DEGS1O15121 323 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 OR2F2O95006 317 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 MPIG6BO95866 241 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 CGB3P0DN86 165 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 CGB7P0DN87 165 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 PF4V1P10720 104 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 PTGFRP43088 359 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 OR3A4PP47883 348 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 RASSF2P50749 326 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 ZP1P60852 638 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 SNRPGP62308 76 aaKnown RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 CDK5R1Q15078 307 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 ZIK1Q3SY52 487 aaPredicted RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 KRBOX4Q5JUW0 171 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 SLC25A30Q5SVS4 291 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 SAXO1Q8IYX7 474 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 ACBD7Q8N6N7 88 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 OR4D6Q8NGJ1 314 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 CAPSLQ8WWF8 208 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 LGALS12Q96DT0 336 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 AKR1E2Q96JD6 320 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 HRASLS5Q96KN8 279 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 C4orf36Q96KX1 117 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 PPIL3Q9H2H8 161 aaKnown RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 ZCCHC4Q9H5U6 513 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 NEK6Q9HC98 313 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 INPP5EQ9NRR6 644 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 IMPAD1Q9NX62 359 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 EXOGQ9Y2C4 368 aaKnown RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 MYRFQ9Y2G1 1151 aa6.73□□□□□ -1.33
USP28-203ENST00000537490 TSSC4Q9Y5U2 329 aaPredicted RBP6.73□□□□□ -1.33
USP28-203ENST00000537490 KBTBD11-OT1A0A1B0GTJ5 212 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A18PA6NE21 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A16PA6NEW6 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A20PA6NIJ5 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 ZNF729A6NN14 1252 aaPredicted RBP6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A9PA6NNJ1 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A12PA8MX19 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A5PA8MXJ8 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 E9PI62 339 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 K7EIL1 84 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 DYNC1I1O14576 645 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 EI24O14681 340 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 ATP5HO75947 161 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 IGHV3-7P01780 117 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 PF4P02776 101 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 ALPLP05186 524 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 CSN2P05814 226 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A15PP0C7V4 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A13PP0C7W8 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A14PP0C7W9 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 FAM90A24PP0C7X0 464 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 TMEM225BP0DP42 221 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 NFYBP25208 207 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 CEACAM3P40198 252 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 ARHGDIBP52566 201 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 PRRX1P54821 245 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 KRTAP10-11P60412 298 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 RBM39Q14498 530 aaKnown RBP6.72□□□□□ -1.33
USP28-203ENST00000537490 ATXN7L3Q14CW9 347 aaPredicted RBP6.72□□□□□ -1.33
USP28-203ENST00000537490 KISS1Q15726 138 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 KIAA2026Q5HYC2 2103 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 C9orf152Q5JTZ5 239 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 MEDAGQ5VYS4 303 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 LHFPL3Q86UP9 236 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 CHST4Q8NCG5 386 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 OR4X2Q8NGF9 303 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 OR13A1Q8NGR1 328 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 PYDC1Q8WXC3 89 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 LEAP2Q969E1 77 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 KIRREL1Q96J84 757 aa6.72□□□□□ -1.33
USP28-203ENST00000537490 NR1H4Q96RI1 486 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms