RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FAM206AQ9NX38 181 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 PTGFRNQ9P2B2 879 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 ZNF319Q9P2F9 582 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 THAP10Q9P2Z0 257 aaPredicted RBP4.75□□□□□ -1.65
CD44-236ENST00000533222 PILRBQ9UKJ0 227 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 WDR45Q9Y484 360 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 YIPF1Q9Y548 306 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 NRXN3Q9Y4C0 1643 aa4.75□□□□□ -1.65
CD44-236ENST00000533222 FOCADQ5VW36 1801 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 COL14A1Q05707 1796 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 STRCQ7RTU9 1775 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 A0A087WX48 190 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TRAV14DV4A0A0A6YYC5 116 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 KIR2DS1A0A191URI9 304 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SMIM35A0A1B0GVV1 85 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 C17orf102A2RUQ5 167 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 MEIS3P1A6NDR6 274 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TMEM235A6NFC5 223 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR2W5A6NFC9 320 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SMIM9A6NGZ8 99 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ANKRD30BLA7E2S9 258 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 C21orf140B9A014 251 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 UMAD1C9J7I0 102 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ZNF878C9JN71 531 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 J3KTA2 159 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 CDC42EP2O14613 210 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 DEGS1O15121 323 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 EDIL3O43854 480 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 CD160O95971 181 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 HLA-DRB1P01911 266 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 MBPP02686 304 aaPredicted RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 HSPB1P04792 205 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 ICAM1P05362 532 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 CELA2AP08217 269 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TACSTD2P09758 323 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR12D1P0DN82 309 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 IGLC2P0DOY2 106 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 IGLC3P0DOY3 106 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 HIST1H1EP10412 219 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 ADRA2CP18825 462 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ALOX5APP20292 161 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PRKACGP22612 351 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ADORA2BP29275 332 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SLC6A6P31641 620 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PYCR1P32322 319 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ARL2P36404 184 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PNPLA4P41247 253 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 KIR2DS4P43632 304 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SLC6A12P48065 614 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 LHX2P50458 406 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 VAMP7P51809 220 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 HNRNPA3P51991 378 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 H2BFSP57053 126 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PROK1P58294 105 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 S100A10P60903 97 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 NTHL1P78549 312 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 ELAVL3Q14576 367 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 KIR2DS1Q14954 304 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SMN1Q16637 294 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 TMEM97Q5BJF2 176 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TMEM196Q5HYL7 178 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PPP1R27Q86WC6 154 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 GKN2Q86XP6 184 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR8I2Q8N0Y5 310 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 LRRC25Q8N386 305 aaPredicted RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 MUC15Q8N387 334 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PAQR4Q8N4S7 273 aaPredicted RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 SIRT6Q8N6T7 355 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR2T12Q8NG77 320 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR1N2Q8NGR9 330 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR13G1Q8NGZ3 307 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 OR4F5Q8NH21 305 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SLC25A40Q8TBP6 338 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 Q8WTZ3 238 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SLC25A28Q96A46 364 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 APOBEC3DQ96AK3 386 aaPredicted RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 APH1AQ96BI3 265 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SARAFQ96BY9 339 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TBX5Q99593 518 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TIMP4Q99727 224 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 GINS3Q9BRX5 216 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 VN1R1Q9GZP7 353 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SLC25A18Q9H1K4 315 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 REEP1Q9H902 201 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 SAP30LQ9HAJ7 183 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TMEM9BQ9NQ34 198 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 CA10Q9NS85 328 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 TAS2R16Q9NYV7 291 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 NXT1Q9UKK6 140 aaKnown RBP4.74□□□□□ -1.65
CD44-236ENST00000533222 RCE1Q9Y256 329 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 PIGLQ9Y2B2 252 aa4.74□□□□□ -1.65
CD44-236ENST00000533222 RGPD3A6NKT7 1758 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 RGPD4Q7Z3J3 1758 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 FNDC1Q4ZHG4 1894 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 A0A087WUU8 490 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 A0A096LPK6 155 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 A6NDN8 102 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 SERINC4A6NH21 518 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 E5RGE8 158 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 FTCDNL1E5RQL4 147 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms