RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMED3Q9Y3Q3 217 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 LRRC3CA6NJW4 275 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 OR7C1O76099 320 aaPredicted RBP16.61■□□□□ 0.25
VPS28-213ENST00000530983 PPYP01298 95 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 SNRNP70P08621 437 aaKnown RBP16.61■□□□□ 0.25
VPS28-213ENST00000530983 FUT3P21217 361 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 HOXA6P31267 233 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 HERV-K104P61576 105 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 AWAT1Q58HT5 328 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 TRIM61Q5EBN2 209 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 MEX3BQ6ZN04 569 aaKnown RBP16.61■□□□□ 0.25
VPS28-213ENST00000530983 ZNF611Q8N823 705 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 CCDC71LQ8N9Z2 235 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 HSD17B11Q8NBQ5 300 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 IP6K3Q96PC2 410 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 A0A1W2PPH5 198 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 CFIP05156 583 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 HAAOP46952 286 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 PCBD1P61457 104 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 Q0VFX4 171 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 WIPI1Q5MNZ9 446 aaPredicted RBP16.6■□□□□ 0.25
VPS28-213ENST00000530983 OR2V1Q8NHB1 315 aa16.6■□□□□ 0.25
VPS28-213ENST00000530983 C7orf77A4D0Y5 90 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 MMP7P09237 267 aaPredicted RBP16.59■□□□□ 0.25
VPS28-213ENST00000530983 DAOP14920 347 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 NQO2P16083 231 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 KRBOX4Q5JUW0 171 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 SLC25A26Q70HW3 274 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 SPSB4Q96A44 273 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 EIF5A2Q9GZV4 153 aaKnown RBP16.59■□□□□ 0.25
VPS28-213ENST00000530983 TUBA4BQ9H853 241 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 C3orf85A0A1B0GTC6 90 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 hCG_1809904A0A1W2PP81 198 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 A0A1W2PR64 198 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 A0A1W2PRV1 198 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 MPPED1O15442 326 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 TRA2AQ13595 282 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS28-213ENST00000530983 CPEB3Q8NE35 698 aaKnown RBP16.59■□□□□ 0.25
VPS28-213ENST00000530983 ABHD3Q8WU67 409 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 BOD1Q96IK1 185 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 TECTBQ96PL2 329 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 SPACA1Q9HBV2 294 aa16.59■□□□□ 0.25
VPS28-213ENST00000530983 MED19A0JLT2 244 aaPredicted RBP16.58■□□□□ 0.25
VPS28-213ENST00000530983 PRH1P02810 166 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 ASCL1P50553 236 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 RAB5CP51148 216 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 RPS18P62269 152 aaKnown RBP16.58■□□□□ 0.25
VPS28-213ENST00000530983 EWSR1Q01844 656 aaKnown RBP eCLIP16.58■□□□□ 0.25
VPS28-213ENST00000530983 TAAR9Q96RI9 348 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 C1QTNF5Q9BXJ0 243 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 C11orf1Q9H5F2 150 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 DEPPQ9NTK1 212 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 PARPBPQ9NWS1 579 aa16.58■□□□□ 0.25
VPS28-213ENST00000530983 STRAPQ9Y3F4 350 aaKnown RBP16.58■□□□□ 0.25
VPS28-213ENST00000530983 NKX2-6A6NCS4 301 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 NDUFS6O75380 124 aaKnown RBP16.58■□□□□ 0.24
VPS28-213ENST00000530983 TRAPPC6AO75865 159 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 RAB5AP20339 215 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 GNRHRP30968 328 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 C5orf24Q7Z6I8 188 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 UBALD2Q8IYN6 164 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 ZNF845Q96IR2 970 aaPredicted RBP16.58■□□□□ 0.24
VPS28-213ENST00000530983 TMEM222Q9H0R3 208 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 PLSCR2Q9NRY7 297 aa16.58■□□□□ 0.24
VPS28-213ENST00000530983 GNMTQ14749 295 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 PPP1R32Q7Z5V6 425 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 C20orf24Q9BUV8 137 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 SLC7A10Q9NS82 523 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 CDS2O95674 445 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 IGHV3-9P01782 118 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 SLC23A3Q6PIS1 610 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 TMEM182Q6ZP80 229 aaPredicted RBP16.57■□□□□ 0.24
VPS28-213ENST00000530983 Q8NFD4 153 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 EXTL1Q92935 676 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 PRDM14Q9GZV8 571 aa16.57■□□□□ 0.24
VPS28-213ENST00000530983 PATE3B3GLJ2 98 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 TRDCB7Z8K6 153 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 RPL36A-HNRNPH2H7BZ11 118 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 K7N7A8 449 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 CYTIPO60759 359 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 PPP1CCP36873 323 aaKnown RBP16.56■□□□□ 0.24
VPS28-213ENST00000530983 EIF2S3P41091 472 aaKnown RBP16.56■□□□□ 0.24
VPS28-213ENST00000530983 COLCA1Q6ZS62 124 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 OR2C3Q8N628 320 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 TCTEX1D2Q8WW35 142 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 FREM1Q5H8C1 2179 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 FAM24AA6NFZ4 105 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 GATCO43716 136 aaKnown RBP16.56■□□□□ 0.24
VPS28-213ENST00000530983 FBP1P09467 338 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 OTX2P32243 289 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 TBC1D26Q86UD7 250 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 FBXO7Q9Y3I1 522 aa16.56■□□□□ 0.24
VPS28-213ENST00000530983 IGSF23A1L1A6 192 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 PINLYPA6NC86 204 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 UMAD1C9J7I0 102 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 M0R036 132 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 PPIHO43447 177 aaKnown RBP16.55■□□□□ 0.24
VPS28-213ENST00000530983 BCL3P20749 454 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 OR2B8PP59922 312 aa16.55■□□□□ 0.24
VPS28-213ENST00000530983 SRPXP78539 464 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms