RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RIOK2Q9BVS4 552 aaKnown RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 SNHG12Q9BXW3 62 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SELENOIQ9C0D9 397 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 MAP1LC3AQ9H492 121 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 RETNQ9HD89 108 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SPANXB1Q9NS25 103 aaPredicted RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 C14orf105Q9NVL8 296 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 MCUBQ9NWR8 336 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 KCNIP1Q9NZI2 227 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 LGALS13Q9UHV8 139 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 MMP17Q9ULZ9 603 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SNX12Q9UMY4 172 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 RCL1Q9Y2P8 373 aaKnown RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 FLVCR1Q9Y5Y0 555 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 V9GY05 133 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SYNMO15061 1565 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 TTC37Q6PGP7 1564 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 LMTK2Q8IWU2 1503 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 FAM135AQ9P2D6 1515 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 PCNX3Q9H6A9 2034 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SETD1AO15047 1707 aaKnown RBP2.51□□□□□ -2.01
CD44-229ENST00000528672 OVOS2A0A0J9YW53 1432 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 NOS1P29475 1434 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 OVOS2Q6IE36 1432 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 SETD5Q9C0A6 1442 aa2.51□□□□□ -2.01
CD44-229ENST00000528672 CNTNAP1P78357 1384 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 KIF1BO60333 1816 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CEP350Q5VT06 3117 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 IGHV1OR15-1A0A075B7D0 117 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 A0A087WX48 190 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 A0A096LPI6 279 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 IGHV3-35A0A0C4DH35 117 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 A0A0G2JRQ6 117 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 K7N7A8 449 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 MANBAO00462 879 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 COPEO14579 308 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CCL25O15444 150 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 PHF1O43189 567 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 ENSAO43768 121 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 EIF4E2O60573 245 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 ALOX12BO75342 701 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 IGHV2-5P01817 119 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 GIPP09681 153 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 TACSTD2P09758 323 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TRAPPC2P0DI81 140 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TRAPPC2BP0DI82 140 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 MPC1LP0DKB6 136 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ESDP10768 282 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TAC1P20366 129 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 AQP1P29972 269 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 GRPRP30550 384 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 APLNRP35414 380 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CDKN2BP42772 138 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TFPI2P48307 235 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 DLX6P56179 175 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CLDN6P56747 220 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TCTAP57738 103 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TAS2R43P59537 309 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TAS2R31P59538 309 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TPI1P60174 286 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 KRTAP10-5P60370 271 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 SLC35B1P78383 322 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 PSG4Q00888 419 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 EDDM3AQ14507 147 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 PRR4Q16378 134 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 C4orf26Q17RF5 130 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 LRRC75BQ2VPJ9 315 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TIMM50Q3ZCQ8 353 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 TMEM97Q5BJF2 176 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 Q5BKY6 102 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 STEAP4Q687X5 459 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 C11orf71Q6IPW1 123 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 MBOAT2Q6ZWT7 520 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 DEFB128Q7Z7B8 93 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ZNF547Q8IVP9 402 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 FBXO16Q8IX29 292 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 PDZD9Q8IXQ8 264 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ZNF440Q8IYI8 595 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 PIANPQ8IYJ0 282 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ATPAF2Q8N5M1 289 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 EID2Q8N6I1 236 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 OR52E4Q8NGH9 312 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 OR4D11Q8NGI4 311 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ZNF564Q8TBZ8 553 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 SPPL2BQ8TCT7 592 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 SLC7A13Q8TCU3 470 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 GPR119Q8TDV5 335 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 RBPMSQ93062 196 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 APOBEC3DQ96AK3 386 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 GALMQ96C23 342 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ZNF689Q96CS4 500 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 DNAJC19Q96DA6 116 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 IMP4Q96G21 291 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 REEP6Q96HR9 211 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 APOL4Q9BPW4 351 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 GINS3Q9BRX5 216 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 MARVELD1Q9BSK0 173 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 C1orf50Q9BV19 199 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 OR11A1Q9GZK7 315 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ABCG5Q9H222 651 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms