RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 DUX4L2P0CJ85 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L3P0CJ86 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L4P0CJ87 422 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L5P0CJ88 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L6P0CJ89 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L7P0CJ90 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 CRISP2P16562 243 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 OR1E1P30953 314 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 HRH1P35367 487 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DAPP51397 102 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 TAS2R39P59534 338 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 SP4Q02446 784 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 GTF3C1Q12789 2109 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 TSC22D1Q15714 1073 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 KLHL12Q53G59 568 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 CLEC6AQ6EIG7 209 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 FAHD1Q6P587 224 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4L9Q6RFH8 374 aaPredicted RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 TMPRSS11AQ6ZMR5 421 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 AHSA2Q719I0 299 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 COX15Q7KZN9 410 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 CALHM3Q86XJ0 350 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 ENTHD1Q8IYW4 607 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 STX19Q8N4C7 294 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 EIF4E3Q8N5X7 224 aaKnown RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 OR56A4Q8NGH8 313 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 ZNF675Q8TD23 568 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 TWIST2Q8WVJ9 160 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 MYDGFQ969H8 173 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 EEF1AKMT3Q96AZ1 226 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 RBP7Q96R05 134 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 TAAR1Q96RJ0 339 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 CDCA4Q9BXL8 241 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 SLC19A3Q9BZV2 496 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 MIXL1Q9H2W2 232 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 NXF3Q9H4D5 531 aaKnown RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 ASB7Q9H672 318 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 HEBP1Q9NRV9 189 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 RBFOX1Q9NWB1 397 aaKnown RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 DUX4Q9UBX2 424 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 SMAD5-AS1Q9Y6J3 95 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 COL11A1P12107 1806 aaPredicted RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 EP300Q09472 2414 aaPredicted RBP5.13□□□□□ -1.59
LSM1-202ENST00000520286 ACACBO00763 2458 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 ATRXP46100 2492 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 PKD1L2Q7Z442 2459 aa5.13□□□□□ -1.59
LSM1-202ENST00000520286 CHD6Q8TD26 2715 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 KMT2EQ8IZD2 1858 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 ZNF670-ZNF695F2Z2N8 137 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 DNASE2O00115 360 aaPredicted RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 MPC2O95563 127 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 OTCP00480 354 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 IFNW1P05000 195 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 ZNF286BP0CG31 522 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SMIM10L2AP0DMW4 78 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SMIM10L2BP0DMW5 78 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 HLA-EP13747 358 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SRMP19623 302 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 GPX4P36969 197 aaPredicted RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 NUP62P37198 522 aaPredicted RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 GZMMP51124 257 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 POLR2JP52435 117 aaKnown RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 CLDN18P56856 261 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 UBE2MP61081 183 aaKnown RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 MXD1Q05195 221 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 BTN1A1Q13410 526 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SSX1Q16384 188 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 FAM83EQ2M2I3 478 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 HSD17B12Q53GQ0 312 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 PABPC1L2AQ5JQF8 200 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 PLET1Q6UQ28 207 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 RTL4Q6ZR62 310 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 VTCN1Q7Z7D3 282 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 TMEM150AQ86TG1 271 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 CLDN22Q8N7P3 220 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 OR2A1Q8NGT9 310 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 OR8K3Q8NH51 312 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 ZNF431Q8TF32 576 aaPredicted RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 RDH5Q92781 318 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SLC35E1Q96K37 410 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 TEX37Q96LM6 180 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 LINC00052Q96N35 136 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 OR2M2Q96R28 347 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 C12orf57Q99622 126 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 COPS4Q9BT78 406 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 TRIM45Q9H8W5 580 aaPredicted RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 UCK1Q9HA47 277 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 RGS18Q9NS28 235 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 PRR34Q9NV39 138 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 MCUBQ9NWR8 336 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 TP53TG3Q9ULZ0 132 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 GINS2Q9Y248 185 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 ST3GAL6Q9Y274 331 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 FIS1Q9Y3D6 152 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 F11RQ9Y624 299 aaKnown RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 V9GYQ6 96 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 SCN10AQ9Y5Y9 1956 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 MYO18AQ92614 2054 aaKnown RBP5.12□□□□□ -1.59
LSM1-202ENST00000520286 MYO15AQ9UKN7 3530 aa5.12□□□□□ -1.59
LSM1-202ENST00000520286 RALGAPA2Q2PPJ7 1873 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms