RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TRIM64CA6NLI5 447 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A22PA8MWA6 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A12PA8MX19 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A5PA8MXJ8 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A23PA8MXZ1 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 SLC33A1O00400 549 aaPredicted RBP11.75□□□□□ -0.53
NUP54-216ENST00000514901 SLC22A1O15245 554 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 CSN2P05814 226 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A15PP0C7V4 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A13PP0C7W8 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A14PP0C7W9 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A24PP0C7X0 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 JUNBP17275 347 aaPredicted RBP11.75□□□□□ -0.53
NUP54-216ENST00000514901 OR3A1P47881 315 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 KCNJ3P48549 501 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 EDDM3BP56851 147 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 PIGYQ3MUY2 71 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 TMEM200BQ69YZ2 307 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 OR4S1Q8NGB4 309 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 OR4M1Q8NGD0 313 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 PCGF1Q9BSM1 259 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 METTL8Q9H825 291 aaKnown RBP11.75□□□□□ -0.53
NUP54-216ENST00000514901 SPACA1Q9HBV2 294 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 C19orf12Q9NSK7 152 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 AK6Q9Y3D8 172 aaKnown RBP11.75□□□□□ -0.53
NUP54-216ENST00000514901 V9GY05 133 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 SLC17A2O00624 439 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 BPNT1O95861 308 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 CD36P16671 472 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 EPHA1P21709 976 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 TIMM50Q3ZCQ8 353 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 PAN3Q58A45 887 aaKnown RBP11.74□□□□□ -0.53
NUP54-216ENST00000514901 GPR157Q5UAW9 335 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 C22orf42Q6IC83 251 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 GDPGP1Q6ZNW5 385 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 KCNG3Q8TAE7 436 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 C1orf147Q96MC9 270 aaPredicted RBP11.74□□□□□ -0.53
NUP54-216ENST00000514901 TBX15Q96SF7 602 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 BARHL1Q9BZE3 327 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 CHST6Q9GZX3 395 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 NCOR1P1Q9H4R4 102 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 UNKLQ9H9P5 680 aaKnown RBP11.74□□□□□ -0.53
NUP54-216ENST00000514901 PLGRKTQ9HBL7 147 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 TXNL4BQ9NX01 149 aaKnown RBP11.74□□□□□ -0.53
NUP54-216ENST00000514901 KIAA2026Q5HYC2 2103 aa11.74□□□□□ -0.53
NUP54-216ENST00000514901 TRAV24A0A0B4J272 114 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 GEMIN2O14893 280 aaKnown RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 CRTAPO75718 401 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 OR7C1O76099 320 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 MGMTP16455 207 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 PRTN3P24158 256 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 P2RX3P56373 397 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 EDDM3AQ14507 147 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 RAB11BQ15907 218 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 KLF17Q5JT82 389 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 NCR3LG1Q68D85 454 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 METAP1DQ6UB28 335 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 VMO1Q7Z5L0 202 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 TPRA1Q86W33 373 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 KCTD7Q96MP8 289 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 SELENOIQ9C0D9 397 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 MS4A7Q9GZW8 240 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 PPA2Q9H2U2 334 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 UBE2J1Q9Y385 318 aaPredicted RBP11.73□□□□□ -0.53
NUP54-216ENST00000514901 LINC00312Q9Y6C7 94 aa11.73□□□□□ -0.53
NUP54-216ENST00000514901 DSCAML1Q8TD84 2053 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 A0A1W2PP11 408 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 RBP4P02753 201 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 GLAP06280 429 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 ZNF728P0DKX0 622 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 ARSBP15848 533 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 RAB3BP20337 219 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 CFPP27918 469 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 PAX5Q02548 391 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 GUCA2AQ02747 115 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 TAF9Q16594 264 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 KRBOX4Q5JUW0 171 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 C9orf139Q6ZV77 190 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 OR2W3Q7Z3T1 314 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 BPIFB2Q8N4F0 458 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 Q8N7P7 452 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 SUMF2Q8NBJ7 301 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 TMEM104Q8NE00 496 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 CORO2AQ92828 525 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 SLC25A28Q96A46 364 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 Q96M66 194 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 GFI1Q99684 422 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 DPCDQ9BVM2 203 aaPredicted RBP11.72□□□□□ -0.53
NUP54-216ENST00000514901 OR51E2Q9H255 320 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 BANF2Q9H503 90 aa11.72□□□□□ -0.53
NUP54-216ENST00000514901 ATRQ13535 2644 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 TRGV10A0A0A0MS01 117 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 A0A0A6YYJ9 748 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 TRAV40A0A0B4J280 105 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 CENPVL3A0A0U1RRI6 287 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ODAMA1E959 279 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 C17orf98A8MV24 154 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 MPIG6BO95866 241 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 IGHV4-38-2P0DP08 117 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 VSIG8P0DPA2 414 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms