RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FBXL3Q9UKT7 428 aa4.19□□□□□ -1.74
NUP54-215ENST00000514313 RPRD2Q5VT52 1461 aaKnown RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 SVILO95425 2214 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 KIAA0232Q92628 1395 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 TMEM213A2RRL7 107 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 ZNF98A6NK75 572 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 I3L4J1 428 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 J3QLI3 93 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 MFNGO00587 321 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 ENTPD6O75354 484 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 RBBP9O75884 186 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 NRASP01111 189 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 HRASP01112 189 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 KRASP01116 189 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 RAB25P57735 213 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 UBE2G2P60604 165 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 RHOAP61586 193 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 ZNHIT3Q15649 155 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 TIMM23BQ5SRD1 257 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 KPRPQ5T749 579 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 NT5DC3Q86UY8 548 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 ZFP62Q8NB50 900 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 ZNF514Q96K75 400 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 TMEM56Q96MV1 263 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 PEBP4Q96S96 227 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 ZNF2Q9BSG1 426 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 RSPO3Q9BXY4 272 aaPredicted RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 DHX35Q9H5Z1 703 aaKnown RBP4.18□□□□□ -1.74
NUP54-215ENST00000514313 SLC22A7Q9Y694 548 aa4.18□□□□□ -1.74
NUP54-215ENST00000514313 IGLV2-18A0A075B6J9 118 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 FABP12A6NFH5 140 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.17□□□□□ -1.74
NUP54-215ENST00000514313 K7EPK0 472 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 RGS5O15539 181 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 SOD3P08294 240 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 SCGB1C2P0DMR2 95 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 SPNP16150 400 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 DNLZQ5SXM8 178 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 NXNL2Q5VZ03 156 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 SPATA24Q86W54 205 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 ATP6V1C2Q8NEY4 427 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 SCGB1C1Q8TD33 95 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 C1orf50Q9BV19 199 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 C15orf41Q9Y2V0 281 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 MIA3Q5JRA6 1907 aa4.17□□□□□ -1.74
NUP54-215ENST00000514313 KIAA1671Q9BY89 1806 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 TRAV8-2A0A0B4J237 113 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 AQP9O43315 295 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 CBR3O75828 277 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 RAB8AP61006 207 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 TTMPQ5BVD1 217 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 RNF182Q8N6D2 247 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 OR2M3Q8NG83 312 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 OR5AK3PQ8NH89 298 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 ULBP1Q9BZM6 244 aa4.16□□□□□ -1.74
NUP54-215ENST00000514313 PUS1Q9Y606 427 aaKnown RBP eCLIP4.16□□□□□ -1.74
NUP54-215ENST00000514313 TPM3P06753 285 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 ELK4P28324 431 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 GDI2P50395 445 aaKnown RBP4.15□□□□□ -1.75
NUP54-215ENST00000514313 PSMD7P51665 324 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 RBX1P62877 108 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 TPM4P67936 248 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 NIPAL1Q6NVV3 410 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 CASP12Q6UXS9 341 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 MARCH3Q86UD3 253 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 ZIC4Q8N9L1 334 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 OR8S1Q8NH09 359 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 DEDD2Q8WXF8 326 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 C7orf50Q9BRJ6 194 aaKnown RBP4.15□□□□□ -1.75
NUP54-215ENST00000514313 SLC19A3Q9BZV2 496 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 ING2Q9H160 280 aa4.15□□□□□ -1.75
NUP54-215ENST00000514313 C14orf166Q9Y224 244 aaKnown RBP4.15□□□□□ -1.75
NUP54-215ENST00000514313 COL27A1Q8IZC6 1860 aaPredicted RBP4.15□□□□□ -1.75
NUP54-215ENST00000514313 FAM183AA6NL82 134 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 C9J4A7 227 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 ISLRO14498 428 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 TOX3O15405 576 aaPredicted RBP4.14□□□□□ -1.75
NUP54-215ENST00000514313 ADAP1O75689 374 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 RAB36O95755 333 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 NUDT2P50583 147 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 STC1P52823 247 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 FAM53BQ14153 422 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 FAM162BQ5T6X4 162 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 TMEM144Q7Z5S9 345 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 DPPA2Q7Z7J5 298 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 OR8A1Q8NGG7 326 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 C2orf15Q8WU43 125 aaKnown RBP4.14□□□□□ -1.75
NUP54-215ENST00000514313 RMI2Q96E14 147 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 OR51E2Q9H255 320 aa4.14□□□□□ -1.75
NUP54-215ENST00000514313 KIF26AQ9ULI4 1882 aaPredicted RBP4.13□□□□□ -1.75
NUP54-215ENST00000514313 VWA8A3KMH1 1905 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 IGHV2-26A0A0B4J1V2 119 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 C8orf87E5RJ46 101 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 GPR171O14626 319 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 TCF21O43680 179 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 EPPINO95925 133 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 IGLV7-43P04211 117 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 PYCR1P32322 319 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 TMEM215Q68D42 235 aa4.13□□□□□ -1.75
NUP54-215ENST00000514313 SPINT4Q6UDR6 99 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms