RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 UFD1Q92890 307 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 C12orf43Q96C57 262 aaKnown RBP2.8□□□□□ -1.96
NUP54-209ENST00000510569 SMIM12Q96EX1 92 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 OR4F4Q96R69 305 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 FOXC2Q99958 501 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 AGMATQ9BSE5 352 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 TMEM208Q9BTX3 173 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 FAIM2Q9BWQ8 316 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 CDCA4Q9BXL8 241 aa2.8□□□□□ -1.96
NUP54-209ENST00000510569 RPL36Q9Y3U8 105 aaKnown RBP2.8□□□□□ -1.96
NUP54-209ENST00000510569 BAZ2AQ9UIF9 1905 aaKnown RBP2.8□□□□□ -1.96
NUP54-209ENST00000510569 C10orf71Q711Q0 1435 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IGKV2-28A0A075B6P5 120 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IGKV2D-24A0A075B6R9 120 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TINCRA0A1B0GVN0 87 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OR6C6A6NF89 314 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 SMIM9A6NGZ8 99 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IDSB3KWA1 339 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ATP6V1G2-DDX39BF2Z307 99 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 C15orf65H3BRN8 121 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 KPNA4O00629 521 aaPredicted RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 BHLHE40O14503 412 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 AZIN1O14977 448 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ERI3O43414 337 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 ENSAO43768 121 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 RAMP1O60894 148 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 CLIC3O95833 236 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 HAND1O96004 215 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OXTP01178 125 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IGKV2D-28P01615 120 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 CD74P04233 296 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TYMSP04818 313 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 FGF1P05230 155 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 LIPCP11150 499 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 SERPINA2P20848 420 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 F8A1P23610 371 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IL12AP29459 219 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 HRH1P35367 487 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 KIR2DS4P43632 304 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 RPL5P46777 297 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 RAB25P57735 213 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 RAB8AP61006 207 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 STXBP1P61764 594 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 BTN3A2P78410 334 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 MYL5Q02045 173 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ST3GAL4Q11206 333 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OR5I1Q13606 314 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OR2F1Q13607 317 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OXA1LQ15070 435 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 RAB35Q15286 201 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TSNQ15631 228 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 ATP6AP1Q15904 470 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 PYCR3Q53H96 274 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 RPL13AP3Q6NVV1 102 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TRIM40Q6P9F5 258 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 SMARCD3Q6STE5 483 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 WDR82Q6UXN9 313 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 GDPD3Q7L5L3 318 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OLIG3Q7RTU3 272 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 FAM220AQ7Z4H9 259 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 VKORC1L1Q8N0U8 176 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 LRRC25Q8N386 305 aaPredicted RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 ATP6V0D2Q8N8Y2 350 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 WDR31Q8NA23 367 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 DUSP18Q8NEJ0 188 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 SLC7A13Q8TCU3 470 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 DOK4Q8TEW6 326 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 IL1F10Q8WWZ1 152 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ZHX1-C8orf76Q96EF9 292 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OR10C1Q96KK4 312 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 ZNF488Q96MN9 340 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TMEM56Q96MV1 263 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 OXGR1Q96P68 337 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 RBP7Q96R05 134 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 KIFC1Q9BW19 673 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 NAT10Q9H0A0 1025 aaKnown RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 SPNS1Q9H2V7 528 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TXNIPQ9H3M7 391 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 CWH43Q9H720 699 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 UBE2ZQ9H832 354 aaPredicted RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 WRAP73Q9P2S5 460 aaPredicted RBP2.79□□□□□ -1.96
NUP54-209ENST00000510569 CD84Q9UIB8 345 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 BTNL2Q9UIR0 455 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 FBXO5Q9UKT4 447 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 COPS3Q9UNS2 423 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 KCNIP3Q9Y2W7 256 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 TMEM56-RWDD3S4R434 201 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 MYH10P35580 1976 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 WDR90Q96KV7 1748 aa2.79□□□□□ -1.96
NUP54-209ENST00000510569 BAZ2BQ9UIF8 2168 aaKnown RBP2.78□□□□□ -1.96
NUP54-209ENST00000510569 MTCL1Q9Y4B5 1905 aaKnown RBP2.78□□□□□ -1.96
NUP54-209ENST00000510569 CCDC88AQ3V6T2 1871 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 MROH7Q68CQ1 1323 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 CENPVL3A0A0U1RRI6 287 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 CLDN24A6NM45 220 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 LYRM9A8MSI8 78 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 TRDCB7Z8K6 153 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 H3BMQ9 156 aa2.78□□□□□ -1.96
NUP54-209ENST00000510569 CDC7O00311 574 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms