RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ZFP57Q9NU63 452 aa13.81□□□□□ -0.2
SQSTM1-213ENST00000510187 NDRG3Q9UGV2 375 aa13.81□□□□□ -0.2
SQSTM1-213ENST00000510187 ATPIF1Q9UII2 106 aa13.81□□□□□ -0.2
SQSTM1-213ENST00000510187 KCNIP3Q9Y2W7 256 aa13.81□□□□□ -0.2
SQSTM1-213ENST00000510187 hCG_38984A0A1B0GV85 526 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 K7EPK0 472 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 PRRG2O14669 202 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 TSPAN9O75954 239 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 EDN3P14138 238 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF32P17041 273 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 ADCYAP1P18509 176 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 SULT1A2P50226 295 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 FUT6P51993 359 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 FLI1Q01543 452 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 TAF9Q16594 264 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 TMEM268Q5VZI3 342 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 GGNBP1Q5YKI7 109 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 GCNT2Q8N0V5 402 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 PUSL1Q8N0Z8 303 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 FAM71E2Q8N5Q1 922 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 C9orf106Q8NAJ2 232 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 OR4A4PQ8NGN8 299 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 FOXB1Q99853 325 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 SUCNR1Q9BXA5 334 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 OR2H1Q9GZK4 316 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 NAA60Q9H7X0 242 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 SLC7A11Q9UPY5 501 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 POMT1Q9Y6A1 747 aa13.8□□□□□ -0.2
SQSTM1-213ENST00000510187 SIGLEC5O15389 551 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 XRCC2O43543 280 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 ANGPTL7O43827 346 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 SS18L1O75177 396 aaPredicted RBP13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 JTBO76095 146 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 PLATP00750 562 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF728P0DKX0 622 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 RPL12P30050 165 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 CAV2P51636 162 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 UCP3P55916 312 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 RBPJQ06330 500 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 GTF3C1Q12789 2109 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 C1orf185Q5T7R7 199 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 OR2A2Q6IF42 318 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 NUFIP2Q7Z417 695 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 OSR2Q8N2R0 312 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 BOLLQ8N9W6 283 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 APH1AQ96BI3 265 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 FAAP24Q9BTP7 215 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 WNT5BQ9H1J7 359 aa13.79□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF850A8MQ14 1090 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 F8W036 122 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 GPR31O00270 319 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 SPRY1O43609 319 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 SNAPINO95295 136 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 IGHV3-9P01782 118 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 PIGPP57054 158 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 PSG4Q00888 419 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 RPL7L1Q6DKI1 246 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 DHRS7BQ6IAN0 325 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 ALKBH3Q96Q83 286 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MICU1Q9BPX6 476 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 SULT4A1Q9BR01 284 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 C12orf49Q9H741 205 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF286AQ9HBT8 521 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 OR2S2Q9NQN1 319 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 PARP11Q9NR21 331 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 UQCC1Q9NVA1 299 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 FAM215AQ9Y5M1 114 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 USP24Q9UPU5 2620 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF816-ZNF321PA0A0X1KG74 233 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MBD3L4A6NDZ8 208 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MBD3L3A6NE82 208 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MBD3L5A6NJ08 208 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 B4GALT1P15291 398 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 IL32P24001 234 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 FAM3AP98173 230 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 PDZK1IP1Q13113 114 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 TMEM187Q14656 261 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 ABCA11PQ4W5N1 156 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 TSPO2Q5TGU0 170 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 SEM1Q6ZVN7 128 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 FAM214BQ7L5A3 538 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 DOLPP1Q86YN1 238 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 OR10AD1Q8NGE0 317 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 AKR7LQ8NHP1 331 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MBD3L2Q8NHZ7 208 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 MRPL24Q96A35 216 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 SPSB4Q96A44 273 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 GPR35Q9HC97 309 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 TREM1Q9NP99 234 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 ZNF835Q9Y2P0 537 aa13.78□□□□□ -0.2
SQSTM1-213ENST00000510187 E5RGE8 158 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 H7C1Q1 480 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 PDCD6O75340 191 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 FCGR2CP31995 323 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 GUCA2BQ16661 112 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 CEACAM16Q2WEN9 425 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 TMEM211Q6ICI0 200 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 LDLRAD3Q86YD5 345 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 RPRMLQ8N4K4 120 aa13.77□□□□□ -0.21
SQSTM1-213ENST00000510187 CNEP1R1Q8N9A8 125 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms