RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF470Q6ECI4 717 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 COMTD1Q86VU5 262 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 C3orf22Q8N5N4 141 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 SPERTQ8NA61 448 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 OR2M3Q8NG83 312 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 OR2Y1Q8NGV0 311 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 OR2AE1Q8NHA4 323 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 CMTM2Q8TAZ6 248 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 ACTL9Q8TC94 416 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 CASTOR1Q8WTX7 329 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 LINC01587Q99440 93 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 SUCNR1Q9BXA5 334 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 DSN1Q9H410 356 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 RHOFQ9HBH0 211 aa1.98□□□□□ -2.09
HMGB1P28-201ENST00000507778 GOLGA8IPA6NC78 632 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 ZNF729A6NN14 1252 aaPredicted RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 F8VP50 259 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 SHOX2O60902 331 aaPredicted RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 PSIP1O75475 530 aaKnown RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 LDOC1O95751 146 aaPredicted RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 IGKV1D-33P01593 117 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 IGKV1-33P01594 117 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 IGHMP01871 453 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 GTF2F2P13984 249 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 PSMB9P28065 219 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 KCNJ3P48549 501 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 HADHBP55084 474 aaKnown RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 HBG1P69891 147 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 HBG2P69892 147 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 ZNF141Q15928 474 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 GOLGA7BQ2TAP0 167 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 NXNL2Q5VZ03 156 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 LRRC6Q86X45 466 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 C10orf107Q8IVU9 208 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 ACBD4Q8NC06 268 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 GABARAPL1Q9H0R8 117 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 METTL8Q9H825 291 aaKnown RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 IFT46Q9NQC8 304 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 MAT2BQ9NZL9 334 aa1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 MRM2Q9UI43 246 aaKnown RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 ZNF230Q9UIE0 474 aaPredicted RBP1.97□□□□□ -2.09
HMGB1P28-201ENST00000507778 A0A1W2PRG6 482 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 FAM25EA8MYX2 175 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 I3L4J1 428 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CDIPTO14735 213 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CRXO43186 299 aaPredicted RBP1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CPSF4O95639 269 aaKnown RBP1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 IGHV3-53P01767 116 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CNTFRP26992 372 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 FOXA1P55317 472 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CD164Q04900 197 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 BSXQ3C1V8 233 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 CEACAM21Q3KPI0 293 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 LGALSLQ3ZCW2 172 aaPredicted RBP1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 LAMTOR1Q6IAA8 161 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 Q6ZQT7 251 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 AHSA2Q719I0 299 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 BPIFB6Q8NFQ5 453 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 OR5P2Q8WZ92 322 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 TMIGD2Q96BF3 282 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 MFSD1Q9H3U5 465 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 POFUT2Q9Y2G5 429 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 SETD1AO15047 1707 aaKnown RBP1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 SCN4AP35499 1836 aa1.96□□□□□ -2.1
HMGB1P28-201ENST00000507778 TICRRQ7Z2Z1 1910 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 SPATA31E1Q6ZUB1 1445 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 IGHV2-26A0A0B4J1V2 119 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 A0A0B4J2C4 111 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 A8MWP4 228 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 RNASEK-C17orf49H0YIS7 233 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 YKT6O15498 198 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 SYNGR2O43760 224 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 PDCD6O75340 191 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 CA2P00918 260 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 TSPOP30536 169 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 PLTPP55058 493 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 PRDX1Q06830 199 aaKnown RBP1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 WDR59Q6PJI9 974 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 FAM183BPQ6ZVS7 135 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 MRPL52Q86TS9 123 aaKnown RBP1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 MARCH3Q86UD3 253 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 EIF4E3Q8N5X7 224 aaKnown RBP1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 PYURFQ96I23 114 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 IGF2BP2-AS1Q96M15 143 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 PKMYT1Q99640 499 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 ZNF586Q9NXT0 402 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 MCTS1Q9ULC4 181 aaKnown RBP1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 C2orf16Q68DN1 1984 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 ADAMTSL3P82987 1691 aa1.95□□□□□ -2.1
HMGB1P28-201ENST00000507778 GOLGA8QA0A0J9YX86 632 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 FAM183AA6NL82 134 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 GGTLC3B5MD39 225 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 FABP7O15540 132 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 TCF21O43680 179 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 FADS2O95864 444 aaKnown RBP1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 PDYNP01213 254 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 S100A2P29034 98 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 CRABP2P29373 138 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 TGFBR2P37173 567 aa1.94□□□□□ -2.1
HMGB1P28-201ENST00000507778 CBX5P45973 191 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms