RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 CXCR4P61073 352 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 MEF2CQ06413 473 aaPredicted RBP12.96□□□□□ -0.33
VIM-208ENST00000497849 DEFB136Q30KP8 78 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 KCTD21Q4G0X4 260 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 PLCXD3Q63HM9 321 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 GDPD3Q7L5L3 318 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 SSX6Q7RTT6 188 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.96□□□□□ -0.33
VIM-208ENST00000497849 TPRX1Q8N7U7 411 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 BPIFB6Q8NFQ5 453 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 OR10H4Q8NGA5 316 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 OR5M8Q8NGP6 311 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 CHPT1Q8WUD6 406 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 LINC00527Q9UJ94 153 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 LAMP5Q9UJQ1 280 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 BLOC1S6Q9UL45 172 aa12.96□□□□□ -0.33
VIM-208ENST00000497849 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.96□□□□□ -0.33
VIM-208ENST00000497849 ERVK11-1P61568 191 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 BDH1Q02338 343 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 TMED1Q13445 227 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 OVCH2Q7RTZ1 564 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 OR8H2Q8N162 312 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 ZNF454Q8N9F8 522 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 OR52I1Q8NGK6 324 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 GGHQ92820 318 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 SCN3BQ9NY72 215 aa12.95□□□□□ -0.34
VIM-208ENST00000497849 EXOGQ9Y2C4 368 aaKnown RBP12.95□□□□□ -0.34
VIM-208ENST00000497849 RPL36Q9Y3U8 105 aaKnown RBP12.95□□□□□ -0.34
VIM-208ENST00000497849 KIAA2026Q5HYC2 2103 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 A0A1W2PQL4 384 aaPredicted RBP12.94□□□□□ -0.34
VIM-208ENST00000497849 hADV38S2A0JD32 116 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 TMEM82A0PJX8 343 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 ZNF670-ZNF695F2Z2N8 137 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 J3QRE1 110 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 IGLV1-47P01700 117 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 ZNF85Q03923 595 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 EDDM3AQ14507 147 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 ZNF573Q86YE8 665 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 ABHD12Q8N2K0 398 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 NIPAL2Q9H841 368 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 PLCXD1Q9NUJ7 323 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 POLDIP2Q9Y2S7 368 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 MOB4Q9Y3A3 225 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 TPRKBQ9Y3C4 175 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 LINC00312Q9Y6C7 94 aa12.94□□□□□ -0.34
VIM-208ENST00000497849 SNTNA6NMZ2 147 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 LEUTXA8MZ59 168 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 OR2T7P0C7T2 308 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 CRHBPP24387 322 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 MPZP25189 248 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 GABARAPL2P60520 117 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 RIPPLY1Q0D2K3 151 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 ZNF322Q6U7Q0 402 aaPredicted RBP12.93□□□□□ -0.34
VIM-208ENST00000497849 PLEKHG7Q6ZR37 379 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 LHFPL3Q86UP9 236 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 COMMD1Q8N668 190 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 TSPAN14Q8NG11 270 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 EDA2RQ9HAV5 297 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 MRPS18AQ9NVS2 196 aaKnown RBP12.93□□□□□ -0.34
VIM-208ENST00000497849 IKZF2Q9UKS7 526 aa12.93□□□□□ -0.34
VIM-208ENST00000497849 A0A0U1RQV5 110 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 PQLC2LA1A4F0 135 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 SERPINE3A8MV23 424 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 F8VVB4 439 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 F8VWA3 439 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 NRASP01111 189 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 IGLV3-1P01715 115 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 FRMD6-AS1P0C7T7 363 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 ARHGDIBP52566 201 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 ZNF260Q3ZCT1 412 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 ZNF684Q5T5D7 378 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 OR52N4Q8NGI2 321 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 OR8U1Q8NH10 309 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 ZNF596Q8TC21 504 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 SNX22Q96L94 193 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 ZMAT4Q9H898 229 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 MRM2Q9UI43 246 aaKnown RBP12.92□□□□□ -0.34
VIM-208ENST00000497849 PSORS1C1Q9UIG5 152 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 PIGLQ9Y2B2 252 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 FRAS1Q86XX4 4008 aa12.92□□□□□ -0.34
VIM-208ENST00000497849 PCLOQ9Y6V0 5065 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 A0A087WXM4 84 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 DAPL1A0PJW8 107 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM172BPA6NC97 362 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A18PA6NE21 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A16PA6NEW6 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A20PA6NIJ5 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A9PA6NNJ1 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A12PA8MX19 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A5PA8MXJ8 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 PTGES3LE9PB15 166 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 LY6LH3BQJ8 138 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 LY86O95711 162 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 RPLP1P05386 114 aaKnown RBP12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A15PP0C7V4 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A13PP0C7W8 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A14PP0C7W9 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 FAM90A24PP0C7X0 464 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 ATP6V1B1P15313 513 aa12.91□□□□□ -0.34
VIM-208ENST00000497849 SLC35B1P78383 322 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms