RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 Q6ZTK2 550 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 KRTAP1-3Q8IUG1 177 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 OR8H2Q8N162 312 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 FAM216BQ8N7L0 139 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 SUMF2Q8NBJ7 301 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 RAB3CQ96E17 227 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 DPCDQ9BVM2 203 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 PLEKHJ1Q9NW61 149 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 MAB21L2Q9Y586 359 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 YLPM1P49750 1951 aaKnown RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 MALRD1Q5VYJ5 2156 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 FUOMA2VDF0 154 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 SERPINE3A8MV23 424 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 MGST3O14880 152 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 SOCS1O15524 211 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 XRCC3O43542 346 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 CA11O75493 328 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 IGHV2-5P01817 119 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 TK1P04183 234 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 EIF4EP06730 217 aaKnown RBP11.56□□□□□ -0.56
C9orf3-221ENST00000489562 WNT2P09544 360 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 USF1P22415 310 aaPredicted RBP11.56□□□□□ -0.56
C9orf3-221ENST00000489562 CDK2P24941 298 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 PAX5Q02548 391 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 PDCD1Q15116 288 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 NKAPLQ5M9Q1 402 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 TMEM69Q5SWH9 247 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 LYPD2Q6UXB3 125 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 C17orf107Q6ZR85 190 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 BIVMQ86UB2 503 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 LAX1Q8IWV1 398 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 ZNRF1Q8ND25 227 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 TMEM185AQ8NFB2 350 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 CLDND2Q8NHS1 167 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 C15orf40Q8WUR7 153 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 Q96MF0 132 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 MIXL1Q9H2W2 232 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 NARFLQ9H6Q4 476 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.56□□□□□ -0.56
C9orf3-221ENST00000489562 SLC25A10Q9UBX3 287 aaPredicted RBP11.56□□□□□ -0.56
C9orf3-221ENST00000489562 METRNQ9UJH8 293 aa11.56□□□□□ -0.56
C9orf3-221ENST00000489562 CR1P17927 2039 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 IGHV4-61A0A0C4DH41 118 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 TMEM82A0PJX8 343 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 H7C1Q1 480 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 DVL1O14640 695 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 PSPNO60542 156 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 GSTP1P09211 210 aaKnown RBP11.55□□□□□ -0.56
C9orf3-221ENST00000489562 HIST1H1DP16402 221 aaKnown RBP11.55□□□□□ -0.56
C9orf3-221ENST00000489562 MNDAP41218 407 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 OR3A1P47881 315 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 TMEM50BP56557 158 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 LMO4P61968 165 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 LOXL1Q08397 574 aaPredicted RBP11.55□□□□□ -0.56
C9orf3-221ENST00000489562 GRK1Q15835 563 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 MOGAT2Q3SYC2 334 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 ESCO2Q56NI9 601 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 GDPD3Q7L5L3 318 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 OR6Q1Q8NGQ2 317 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 NEK7Q8TDX7 302 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 DIRAS2Q96HU8 199 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 ARHGAP5-AS1Q96IT6 56 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 PECRQ9BY49 303 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 PPA2Q9H2U2 334 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 EXTL2Q9UBQ6 330 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 CTSZQ9UBR2 303 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 CLN8Q9UBY8 286 aa11.55□□□□□ -0.56
C9orf3-221ENST00000489562 NOTCH2Q04721 2471 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 KIAA2026Q5HYC2 2103 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 NBPF19A0A087WUL8 3843 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 TRAV18A0A075B6X5 111 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 MFNGO00587 321 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 ECDO95905 644 aaPredicted RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 TFF1P04155 84 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 ERP29P30040 261 aaKnown RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 TNFSF8P32971 234 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 GNB2P62879 340 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 MRPS15P82914 257 aaKnown RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 PNLIPRP3Q17RR3 467 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 PLAC9Q5JTB6 97 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 CNIH2Q6PI25 160 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 METAP1DQ6UB28 335 aaPredicted RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 C6orf201Q7Z4U5 140 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 OR4S1Q8NGB4 309 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 OR4M1Q8NGD0 313 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 ST8SIA4Q92187 359 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 SSBP3Q9BWW4 388 aaPredicted RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 REG4Q9BYZ8 158 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 CHST6Q9GZX3 395 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 SHARPINQ9H0F6 387 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 RIMS4Q9H426 269 aaPredicted RBP11.54□□□□□ -0.56
C9orf3-221ENST00000489562 NCOR1P1Q9H4R4 102 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 ETAA1Q9NY74 926 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 ZNF581Q9P0T4 197 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 LPAR3Q9UBY5 353 aa11.54□□□□□ -0.56
C9orf3-221ENST00000489562 CREBBPQ92793 2442 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 A0A096LNT2 108 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 TRBV23-1A0A0A0MS06 115 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 A0A1B0GW55 424 aa11.53□□□□□ -0.56
C9orf3-221ENST00000489562 POM121CA8CG34 1229 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms