RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CHAC2Q8WUX2 184 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 MS4A10Q96PG2 267 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 COL5A3P25940 1745 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 ZFC3H1O60293 1989 aaKnown RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 ELOA3CA0A087WX78 387 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 GYPAP02724 150 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 HLA-GP17693 338 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 NANOS3P60323 173 aaKnown RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 D2HGDHQ8N465 521 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 MRGPRDQ8TDS7 321 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 Q9N2K0 584 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 MYOZ1Q9NP98 299 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 MANBALQ9NQG1 85 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 MMP7P09237 267 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 VDAC1P21796 283 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 FAM78BQ5VT40 261 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 ALX4Q9H161 411 aaPredicted RBP14.48□□□□□ -0.09
COL7A1-210ENST00000487017 FKBP11Q9NYL4 201 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 VSIG4Q9Y279 399 aa14.48□□□□□ -0.09
COL7A1-210ENST00000487017 FCN1O00602 326 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 CHST1O43916 411 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 MMP16P51512 607 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 SLC26A10Q8NG04 563 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 WDR61Q9GZS3 305 aaKnown RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 TNFSF18Q9UNG2 199 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 KIAA1324LA8MWY0 1029 aaPredicted RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 PTBP3O95758 552 aaKnown RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 ZNF83P51522 516 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 WDR74Q6RFH5 385 aaPredicted RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 PTX4Q96A99 478 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 ISOC2Q96AB3 205 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 PPYP01298 95 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 BSXQ3C1V8 233 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 C1QTNF12Q5T7M4 302 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 OR4C5Q8NGB2 326 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 BCL2L2Q92843 193 aaPredicted RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 DTX4Q9Y2E6 619 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 AMDHD2Q9Y303 409 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 SPINT1O43278 529 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 GAPTQ8N292 157 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 CXXC4Q9H2H0 198 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 PRO1933Q9H354 126 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 SLC2A9Q9NRM0 540 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 KLHDC2Q9Y2U9 406 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 CRYABP02511 175 aaKnown RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 BMP5P22003 454 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 ZNF154Q13106 437 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 RNASEKQ6P5S7 137 aaKnown RBP14.47□□□□□ -0.09
COL7A1-210ENST00000487017 PARP11Q9NR21 331 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 KLK13Q9UKR3 277 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 RNF24Q9Y225 148 aa14.47□□□□□ -0.09
COL7A1-210ENST00000487017 KNL1Q8NG31 2342 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 F5H697 171 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 SLC25A5P05141 298 aaKnown RBP14.46□□□□□ -0.09
COL7A1-210ENST00000487017 BCL3P20749 454 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 LIMS1P48059 325 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 GAMTQ14353 236 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 OR5D13Q8NGL4 314 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 MS4A7Q9GZW8 240 aaPredicted RBP14.46□□□□□ -0.09
COL7A1-210ENST00000487017 C7orf77A4D0Y5 90 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 CDRT15L2A8MXV6 281 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 KIR2DL1P43626 348 aaPredicted RBP14.46□□□□□ -0.09
COL7A1-210ENST00000487017 ERVS71-1P61550 626 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 TMEM183BQ1AE95 376 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 SPNS3Q6ZMD2 512 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 KIR3DL2P43630 455 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 FOXO1Q12778 655 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 TGIF2LXQ8IUE1 241 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 OR1L4Q8NGR5 311 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 AAMDCQ9H7C9 122 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 NAGKQ9UJ70 344 aa14.46□□□□□ -0.09
COL7A1-210ENST00000487017 B4DEV8 164 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 MFNGO00587 321 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 GCM2O75603 506 aaPredicted RBP14.46□□□□□ -0.1
COL7A1-210ENST00000487017 EWSR1Q01844 656 aaKnown RBP eCLIP14.46□□□□□ -0.1
COL7A1-210ENST00000487017 RFLNBQ8N5W9 214 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 ADAT3Q96EY9 351 aaPredicted RBP14.46□□□□□ -0.1
COL7A1-210ENST00000487017 GHITMQ9H3K2 345 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 UBR3Q6ZT12 1888 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 BMPR1BO00238 502 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 LYZL6O75951 148 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 TMEM211Q6ICI0 200 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 LYPD8Q6UX82 237 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 SH2D2AQ9NP31 389 aa14.46□□□□□ -0.1
COL7A1-210ENST00000487017 LYRM2Q9NU23 88 aaPredicted RBP14.46□□□□□ -0.1
COL7A1-210ENST00000487017 DAOP14920 347 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 NCMAPQ5T1S8 102 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 C9orf40Q8IXQ3 194 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 TM4SF19Q96DZ7 209 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 MIA3Q5JRA6 1907 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 MT-CO3P00414 261 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 IGKV1D-16P01601 117 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 C19orf35Q6ZS72 473 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 BLNKQ8WV28 456 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 ANAPC16Q96DE5 110 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 MOSPD3O75425 235 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 HOGA1Q86XE5 327 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 CHST5Q9GZS9 411 aa14.45□□□□□ -0.1
COL7A1-210ENST00000487017 ANKRD34CP0C6C1 535 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms