RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C1orf122Q6ZSJ8 110 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 TRAPPC6BQ86SZ2 158 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 OSR2Q8N2R0 312 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ZDHHC22Q8N966 263 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 CHST4Q8NCG5 386 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 TNFRSF14Q92956 283 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ZDHHC16Q969W1 377 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 IL36GQ9NZH8 169 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 ST3GAL6Q9Y274 331 aa12.09□□□□□ -0.47
USP4-212ENST00000486549 A0A0U1RQK1 487 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 hCG_1809904A0A1W2PP81 198 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 A0A1W2PPE2 198 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 A0A1W2PR64 198 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 A0A1W2PRV1 198 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 hADV38S2A0JD32 116 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 DNAJC9-AS1A6NH13 148 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 HAX1O00165 279 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 RRP9O43818 475 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 MRPS14O60783 128 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 SC5DO75845 299 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 UCHL1P09936 223 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 PRTN3P24158 256 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 COX7A1P24310 79 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 PSMA1P25786 263 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 LMO1P25800 156 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 P2RX3P56373 397 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 AESQ08117 197 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 TRAM1Q15629 374 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 PAN3Q58A45 887 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 METAP1DQ6UB28 335 aaPredicted RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 TMEM91Q6ZNR0 172 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 TCF23Q7RTU1 214 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 LRRTM1Q86UE6 522 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 SPARTQ8N0X7 666 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 PIP4P2Q8N4L2 257 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 OR4D6Q8NGJ1 314 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 OR51T1Q8NGJ9 327 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 FAM216AQ8WUB2 273 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 ZNF714Q96N38 554 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 YTHDF1Q9BYJ9 559 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 SLITRK2Q9H156 845 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 PPIL3Q9H2H8 161 aaKnown RBP12.08□□□□□ -0.48
USP4-212ENST00000486549 TNFRSF19Q9NS68 423 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 ZNF581Q9P0T4 197 aa12.08□□□□□ -0.48
USP4-212ENST00000486549 MEGF11A6BM72 1044 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 NPFFO15130 113 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 ZNF780AO75290 641 aaPredicted RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 OR7C1O76099 320 aaPredicted RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 ZNF728P0DKX0 622 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 SRMP19623 302 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 PSMB9P28065 219 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 GABRA5P31644 462 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 GLIPR1P48060 266 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 DLX6P56179 175 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 RBM11P57052 281 aaKnown RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 UBA52P62987 128 aaKnown RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 FABP5Q01469 135 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 MEF2CQ06413 473 aaPredicted RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 SSX1Q16384 188 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 TUSC1Q2TAM9 212 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 KRBOX4Q5JUW0 171 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 GLT8D1Q68CQ7 371 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 C12orf54Q6X4T0 127 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 CDH26Q8IXH8 852 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 C11orf42Q8N5U0 333 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 Q8NFD4 153 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 PHYHIPQ92561 330 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 PCDHB16Q9NRJ7 776 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 SF3B6Q9Y3B4 125 aaKnown RBP12.07□□□□□ -0.48
USP4-212ENST00000486549 LINC00312Q9Y6C7 94 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 KIAA2026Q5HYC2 2103 aa12.07□□□□□ -0.48
USP4-212ENST00000486549 FBN3Q75N90 2809 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 TRAV24A0A0B4J272 114 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 MEIOCA2RUB1 952 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 FUOMA2VDF0 154 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 C17orf98A8MV24 154 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 GEMIN2O14893 280 aaKnown RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 HOXA3O43365 443 aaPredicted RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 CRTAPO75718 401 aaPredicted RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 GTF2F2P13984 249 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 ERP29P30040 261 aaKnown RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 UBE2E1P51965 193 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 ACTG1P63261 375 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 GPR176Q14439 515 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 TAF9Q16594 264 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 ATAD3CQ5T2N8 411 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 HCP5Q6MZN7 132 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 ZNF773Q6PK81 442 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 LYPD6Q86Y78 171 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 COQ2Q96H96 371 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 C1orf147Q96MC9 270 aaPredicted RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 UQCC2Q9BRT2 126 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 BANF2Q9H503 90 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 UNKLQ9H9P5 680 aaKnown RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 ZMAT3Q9HA38 289 aaKnown RBP12.06□□□□□ -0.48
USP4-212ENST00000486549 FAM96BQ9Y3D0 163 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 LRRC42Q9Y546 428 aa12.06□□□□□ -0.48
USP4-212ENST00000486549 TRGV10A0A0A0MS01 117 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 ODAMA1E959 279 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms