RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MITD1Q8WV92 249 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 TSSK6Q9BXA6 273 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 SRRQ9GZT4 340 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR2D2Q9H210 308 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 PLEKHA1Q9HB21 404 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 LZTFL1Q9NQ48 299 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 RBM22Q9NW64 420 aaKnown RBP eCLIP0.73□□□□□ -2.29
VPS50-216ENST00000484954 MRPL16Q9NX20 251 aaKnown RBP0.73□□□□□ -2.29
VPS50-216ENST00000484954 IFNKQ9P0W0 207 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR5V1Q9UGF6 321 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 CYB5R1Q9UHQ9 305 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 RBMX2Q9Y388 322 aaKnown RBP0.73□□□□□ -2.29
VPS50-216ENST00000484954 PLXNA3P51805 1871 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 MROH5Q6ZUA9 1318 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 A0A0B4J2C4 111 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 CDIPTO14735 213 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 TCAPO15273 167 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 SHOX2O60902 331 aaPredicted RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 MYO1DO94832 1006 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 CA2P00918 260 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 IGKV5-2P06315 115 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 CTLA4P16410 223 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 PTNP21246 168 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 COILP38432 576 aaPredicted RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 GCLMP48507 274 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 PLTPP55058 493 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 CCL23P55773 120 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 ACTBL2Q562R1 376 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 HSP90AA4PQ58FG1 418 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 C6orf183Q5T699 404 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 CYHR1Q6ZMK1 362 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 ZNF567Q8N184 647 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 SPICQ8N5J4 248 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 C3orf22Q8N5N4 141 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 ASCC1Q8N9N2 400 aaKnown RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 DRAXINQ8NBI3 349 aaPredicted RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 OR6N2Q8NGY6 317 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 OR2AE1Q8NHA4 323 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 RNASE11Q8TAA1 199 aaKnown RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 LGALS14Q8TCE9 139 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 DOK4Q8TEW6 326 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 C2orf15Q8WU43 125 aaKnown RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 C22orf15Q8WYQ4 148 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 OR5P2Q8WZ92 322 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 LRRC39Q96DD0 335 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 YPEL4Q96NS1 127 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 TRIB3Q96RU7 358 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 B9D2Q9BPU9 175 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 ANP32EQ9BTT0 268 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 BEX2Q9BXY8 128 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 TSGA10Q9BZW7 698 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 NXF2Q9GZY0 626 aaKnown RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 SYT4Q9H2B2 425 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 WDR55Q9H6Y2 383 aaPredicted RBP0.72□□□□□ -2.29
VPS50-216ENST00000484954 LRRC19Q9H756 370 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 SDHAF3Q9NRP4 125 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 VAPAQ9P0L0 249 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 FADS3Q9Y5Q0 445 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 ZNF780BQ9Y6R6 833 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 TENM3Q9P273 2699 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 SDK1Q7Z5N4 2213 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 PLXNB3Q9ULL4 1909 aa0.72□□□□□ -2.29
VPS50-216ENST00000484954 IGHV1-45A0A0A0MS14 117 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 A0A1B0GTI1 187 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 MGAT4DA6NG13 374 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 G3V3Q6 166 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 H3BP45 60 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 UPK2O00526 184 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 SLC31A1O15431 190 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 TCF21O43680 179 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 COX7A2P2O60397 106 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 EPPINO95925 133 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 HLA-AP01891 365 aaKnown RBP0.71□□□□□ -2.3
VPS50-216ENST00000484954 GABRA1P14867 456 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 ZNF22P17026 224 aaPredicted RBP0.71□□□□□ -2.3
VPS50-216ENST00000484954 TSPOP30536 169 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 ARR3P36575 388 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 TTPAP49638 278 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 C1QTNF8P60827 252 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 BAXQ07812 192 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 FOXF1Q12946 379 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 GPR176Q14439 515 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 CASP8Q14790 479 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 STK38Q15208 465 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 ATP6AP1LQ52LC2 224 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 UBE2NLQ5JXB2 153 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 RESP18Q5W5W9 173 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 ELP2Q6IA86 826 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 UGT2A3Q6UWM9 527 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 Q6ZQT7 251 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 Q6ZT83 130 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 CYP4Z1Q86W10 505 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 MSRB3Q8IXL7 192 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 OR10D4PQ8NGN7 298 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 CLHC1Q8NHS4 586 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 CDKL2Q92772 493 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 RAD51AP1Q96B01 352 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 PYURFQ96I23 114 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 LINC01587Q99440 93 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 HINT2Q9BX68 163 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms