RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MBP02144 154 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 MT-ND4LP03901 98 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 VDAC1P21796 283 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 PLGLAQ15195 96 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 PPP1R32Q7Z5V6 425 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 TMEM251Q8N6I4 163 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 RXFP4Q8TDU9 374 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ABHD5Q8WTS1 349 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 UHRF2Q96PU4 802 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 MRPL13Q9BYD1 178 aaKnown RBP12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ARV1Q9H2C2 271 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ATPIF1Q9UII2 106 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 IGLV3-32A0A0A0MS00 114 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 A0A0U1RQK1 487 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ZNF891A8MT65 544 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-220ENST00000477528 CA11O75493 328 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 CDS2O95674 445 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 MELTFP08582 738 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ADIRFQ15847 76 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 HIKESHIQ53FT3 197 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 LYZL2Q7Z4W2 148 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 LINC00596Q86U02 117 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 FRZBQ92765 325 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 LOXL4Q96JB6 756 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 NPTNQ9Y639 398 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 POLR2GP62487 172 aaKnown RBP eCLIP12.73□□□□□ -0.37
HDAC6-220ENST00000477528 GAPTQ8N292 157 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ADGRG7Q96K78 797 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 IMMP1LQ96LU5 166 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 UQCC1Q9NVA1 299 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 HSF4Q9ULV5 492 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 LOC390937A0A1W2PQ73 354 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 NDUFB7P17568 137 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ZNF816Q0VGE8 651 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-220ENST00000477528 NHLRC3Q5JS37 347 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 TMPRSS7Q7RTY8 843 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 ZFP82Q8N141 532 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 FBXO17Q96EF6 278 aa12.73□□□□□ -0.37
HDAC6-220ENST00000477528 MFNGO00587 321 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CRYABP02511 175 aaKnown RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CD82P27701 267 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 SSX9Q7RTT3 188 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 MS4A3Q96HJ5 214 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 ENDOGQ14249 297 aaKnown RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 DEFB108BQ8NET1 73 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 RP1L1Q8IWN7 2480 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 OR2Z1Q8NG97 314 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 H1FXQ92522 213 aaKnown RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 PINX1Q96BK5 328 aaKnown RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 BOD1Q96IK1 185 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 Q96M66 194 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 ACTR3CQ9C0K3 210 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 C5orf66Q9H5L9 145 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CACFD1Q9UGQ2 172 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 MKRN2OSH3BPM6 223 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 KRASP01116 189 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 PTAFRP25105 342 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CEACAM21Q3KPI0 293 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CISD2Q8N5K1 135 aaKnown RBP12.72□□□□□ -0.37
HDAC6-220ENST00000477528 C2CD4CQ8TF44 421 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 SLC39A7Q92504 469 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 CACNG5Q9UF02 275 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 URGCP-MRPS24S4R325 110 aa12.72□□□□□ -0.37
HDAC6-220ENST00000477528 SRCAPQ6ZRS2 3230 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 A0A1B0GTI1 187 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 CYTIPO60759 359 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 COX5AP20674 150 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 OR10AD1Q8NGE0 317 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 S1PR3Q99500 378 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 CXXC4Q9H2H0 198 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 CCL28Q9NRJ3 127 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 LOC102723996A0A087X1L8 192 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 SCGB2A1O75556 95 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 CD8AP01732 235 aa12.71□□□□□ -0.37
HDAC6-220ENST00000477528 NOVA1P51513 510 aaKnown RBP12.71□□□□□ -0.37
HDAC6-220ENST00000477528 ZNF468Q5VIY5 522 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-220ENST00000477528 GMPPAQ96IJ6 420 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-220ENST00000477528 PLXNB3Q9ULL4 1909 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 ZDBF2Q9HCK1 2354 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 LPAR6P43657 344 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 IGFBP7Q16270 282 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 TUSC1Q2TAM9 212 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 OVCH2Q7RTZ1 564 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 MARVELD3Q96A59 401 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 BTF3L4Q96K17 158 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 ZIC3O60481 467 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 EIF2S3P41091 472 aaKnown RBP12.71□□□□□ -0.38
HDAC6-220ENST00000477528 P2RY4P51582 365 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 FHL1Q13642 323 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 TRAT1Q6PIZ9 186 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 PRDM6Q9NQX0 595 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 PIPOXQ9P0Z9 390 aa12.71□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A10PA6NDY2 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A18PA6NE21 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A16PA6NEW6 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A20PA6NIJ5 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A8PA6NJQ4 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A7PA6NKC0 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A22PA8MWA6 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A12PA8MX19 464 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms