RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SLC29A1Q99808 456 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 CITED2Q99967 270 aaPredicted RBP15.06■□□□□ 0
CCDC88B-206ENST00000473405 PDCD1LG2Q9BQ51 273 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 MMP28Q9H239 520 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 ZNF286AQ9HBT8 521 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 AMBNQ9NP70 447 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 TAS2R3Q9NYW6 316 aa15.06■□□□□ 0
CCDC88B-206ENST00000473405 TMEM212A6NML5 194 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 ALX3O95076 343 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 HCKP08631 526 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 CD24P25063 80 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 CD34P28906 385 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 SCN1BQ07699 218 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 RAB40BQ12829 278 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 ATXN7L3Q14CW9 347 aaPredicted RBP15.05■□□□□ -0
CCDC88B-206ENST00000473405 KISS1Q15726 138 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 UTF1Q5T230 341 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 OR52W1Q6IF63 320 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 NDUFA11Q86Y39 141 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 MRPL48Q96GC5 212 aaKnown RBP15.05■□□□□ -0
CCDC88B-206ENST00000473405 OCSTAMPQ9BR26 566 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 PPIL3Q9H2H8 161 aaKnown RBP15.05■□□□□ -0
CCDC88B-206ENST00000473405 INPP5EQ9NRR6 644 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 DPM3Q9P2X0 92 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 PCDHGB5Q9Y5G0 923 aa15.05■□□□□ -0
CCDC88B-206ENST00000473405 FUOMA2VDF0 154 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 FADS2O95864 444 aaKnown RBP15.04■□□□□ -0
CCDC88B-206ENST00000473405 PTGFRP43088 359 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 VDAC2P45880 294 aaPredicted RBP15.04■□□□□ -0
CCDC88B-206ENST00000473405 GABPB1Q06547 395 aaPredicted RBP15.04■□□□□ -0
CCDC88B-206ENST00000473405 KRBOX4Q5JUW0 171 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 LPCAT4Q643R3 524 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 ZNF529Q6P280 563 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 RTN4RL2Q86UN3 420 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 SERPINA12Q8IW75 414 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 OR52I1Q8NGK6 324 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 OR5D14Q8NGL3 314 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 OR5AK2Q8NH90 309 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 ZNF596Q8TC21 504 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 APH1BQ8WW43 257 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 RGP1Q92546 391 aaPredicted RBP15.04■□□□□ -0
CCDC88B-206ENST00000473405 C9orf16Q9BUW7 83 aa15.04■□□□□ -0
CCDC88B-206ENST00000473405 A0A087X0M5 115 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 A0A1B0GX30 115 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 MPZL2O60487 215 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 LIMS3P0CW19 117 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 LIMS4P0CW20 117 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 TMEM225BP0DP42 221 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 C17orf58Q2M2W7 97 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 ARSJQ5FYB0 599 aaPredicted RBP15.03■□□□□ -0
CCDC88B-206ENST00000473405 ZNF691Q5VV52 312 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 Q96MT0 163 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 MYCBPQ99417 103 aaPredicted RBP15.03■□□□□ -0
CCDC88B-206ENST00000473405 MRPS18AQ9NVS2 196 aaKnown RBP15.03■□□□□ -0
CCDC88B-206ENST00000473405 ING3Q9NXR8 418 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 DHDHQ9UQ10 334 aa15.03■□□□□ -0
CCDC88B-206ENST00000473405 LOC100130705A0A1B0GUX0 176 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 LY6LH3BQJ8 138 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 DEGS1O15121 323 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 PEX14O75381 377 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 PRB2P02812 416 aaPredicted RBP15.02■□□□□ -0
CCDC88B-206ENST00000473405 ALDOBP05062 364 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 RPSAP08865 295 aaKnown RBP15.02■□□□□ -0
CCDC88B-206ENST00000473405 CCDC159P0C7I6 412 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 MTNR1BP49286 362 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 EMX1Q04741 257 aaPredicted RBP15.02■□□□□ -0
CCDC88B-206ENST00000473405 MRPL28Q13084 256 aaKnown RBP15.02■□□□□ -0
CCDC88B-206ENST00000473405 HLA-DRB5Q30154 266 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 ELP2Q6IA86 826 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 CCDC121Q6ZUS5 278 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 C16orf82Q7Z2V1 217 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 OR51A2Q8NGJ7 313 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 OR51T1Q8NGJ9 327 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 TSEN15Q8WW01 171 aaKnown RBP15.02■□□□□ -0
CCDC88B-206ENST00000473405 R3HDM4Q96D70 268 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 LIN7BQ9HAP6 207 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 FAM118AQ9NWS6 357 aa15.02■□□□□ -0
CCDC88B-206ENST00000473405 TRAV24A0A0B4J272 114 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 ZNF729A6NN14 1252 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 LEUTXA8MZ59 168 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 H0YJX3 145 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 BUB1B-PAK6H3BSN5 160 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 GABRPO00591 440 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 HSPB6O14558 160 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 AMY1AP04745 511 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 AMY2AP04746 511 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 CGB3P0DN86 165 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 CGB7P0DN87 165 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 GTF2A1P52655 376 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 SMN1Q16637 294 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 ZSCAN26Q16670 478 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 OXLD1Q5BKU9 147 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 TPTE2P1Q5T6R2 138 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 XAF1Q6GPH4 301 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 PXT1Q8NFP0 134 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 OR4F17Q8NGA8 305 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 OR4D6Q8NGJ1 314 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 KIRREL1Q96J84 757 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 OR4F4Q96R69 305 aa15.01□□□□□ -0.01
CCDC88B-206ENST00000473405 JAM3Q9BX67 310 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms