RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 LRRC3CA6NJW4 275 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 H3BP45 60 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 RAB29O14966 203 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 HMGB3O15347 200 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 PHF1O43189 567 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 LATO43561 262 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TSPAN2O60636 221 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 RAD51DO75771 328 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CDS2O95674 445 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SOD2P04179 222 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CT45A8P0DMV1 189 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CT45A9P0DMV2 189 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 BMP5P22003 454 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 HSD11B1P28845 292 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 BLVRBP30043 206 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 DYNLT3P51808 116 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZNF117Q03924 483 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 PRDX1Q06830 199 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 RPL18Q07020 188 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 IL13RA2Q14627 380 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CT45A2Q5DJT8 189 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ACTL10Q5JWF8 245 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 C1orf100Q5SVJ3 147 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 C1orf140Q5VVS0 124 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 LINC01551Q86U37 167 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SAXO1Q8IYX7 474 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ATOH7Q8N100 152 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 KREMEN2Q8NCW0 462 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 OR4B1Q8NGF8 309 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 OR2D3Q8NGH3 330 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 RTN4IP1Q8WWV3 396 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 DNASE2BQ8WZ79 361 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 PTX4Q96A99 478 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 KTI12Q96EK9 354 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 CAPNS2Q96L46 248 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 OR6C1Q96RD1 312 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 GABRG3Q99928 467 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZDHHC11Q9H8X9 412 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TBX21Q9UL17 535 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SELENOKQ9Y6D0 94 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 VWA8A3KMH1 1905 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 BRCA2P51587 3418 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SNRNP200O75643 2136 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 IGHV2OR16-5A0A0B4J2B6 119 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 IGHV2-70DA0A0C4DH43 119 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 NDUFS8O00217 210 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 WDR1O75083 606 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 BPNT1O95861 308 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 IFNA1P01562 189 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 IFNA5P01569 189 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CTSBP07858 339 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TMEM225BP0DP42 221 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZNF823P16415 610 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 IGFBP3P17936 291 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 NKX2-1P43699 371 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 FAM53BQ14153 422 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ELAVL3Q14576 367 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 PDGFRLQ15198 375 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 C9orf50Q5SZB4 431 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TEX43Q6ZNM6 134 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TCF23Q7RTU1 214 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZNF547Q8IVP9 402 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 WDFY1Q8IWB7 410 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CISD2Q8N5K1 135 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 SIGLECL1Q8N7X8 197 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 AGBL5Q8NDL9 886 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 OR4N2Q8NGD1 307 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TMEM171Q8WVE6 324 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 PSMF1Q92530 271 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 PINX1Q96BK5 328 aaKnown RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 LIN37Q96GY3 246 aaPredicted RBP3.69□□□□□ -1.82
VPS50-210ENST00000471188 BOD1Q96IK1 185 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 WNT10AQ9GZT5 417 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZBP1Q9H171 429 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 OR10A5Q9H207 317 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 NKX2-4Q9H2Z4 354 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 TPSG1Q9NRR2 321 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SLC35D1Q9NTN3 355 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 ZNF581Q9P0T4 197 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 CLN8Q9UBY8 286 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 SHANK1Q9Y566 2161 aa3.69□□□□□ -1.82
VPS50-210ENST00000471188 MYO7BQ6PIF6 2116 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 LOC101059948A0A1B0GTJ6 334 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 A0A1W2PR80 420 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 IGSF23A1L1A6 192 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 VSTM2BA6NLU5 285 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 CTSVO60911 334 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 AKR1A1P14550 325 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 SELPP16109 830 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 GLB1P16278 677 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 FSTP19883 344 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 RPS12P25398 132 aaKnown RBP3.68□□□□□ -1.82
VPS50-210ENST00000471188 CFPP27918 469 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 EFNA3P52797 238 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 RPS4XP62701 263 aaKnown RBP3.68□□□□□ -1.82
VPS50-210ENST00000471188 ZFP36L1Q07352 338 aaKnown RBP3.68□□□□□ -1.82
VPS50-210ENST00000471188 HYAL1Q12794 435 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 ZNF154Q13106 437 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 MSMO1Q15800 293 aa3.68□□□□□ -1.82
VPS50-210ENST00000471188 FFAR4Q5NUL3 377 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms