RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, human

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL7A1-208	ENST00000470076	PELI1	Q96FA3	418 aa		13.99	□□□□□ -0.17
COL7A1-208	ENST00000470076	SPACA5	Q96QH8	159 aa		13.99	□□□□□ -0.17
COL7A1-208	ENST00000470076	EXOG	Q9Y2C4	368 aa	Known RBP	13.99	□□□□□ -0.17
COL7A1-208	ENST00000470076		J3QLW9	94 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	TOR1A	O14656	332 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	RPSA	P08865	295 aa	Known RBP	13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	ZNF19	P17023	458 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	CD24	P25063	80 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	PTGFR	P43088	359 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	SCN1B	Q07699	218 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	ALKBH1	Q13686	389 aa	Known RBP	13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	BAIAP2L2	Q6UXY1	529 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	CENPV	Q7Z7K6	275 aa	Predicted RBP	13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	WFDC9	Q8NEX5	89 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	OR4D6	Q8NGJ1	314 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	PHF21A	Q96BD5	680 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	C4orf36	Q96KX1	117 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	SLC25A33	Q9BSK2	321 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	ZCCHC4	Q9H5U6	513 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076	ZNF286A	Q9HBT8	521 aa		13.98	□□□□□ -0.17
COL7A1-208	ENST00000470076		A0A087X0M5	115 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076		A0A1B0GX30	115 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	ZNF729	A6NN14	1252 aa	Predicted RBP	13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	EI24	O14681	340 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	OR2F2	O95006	317 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	ALX3	O95076	343 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	PF4V1	P10720	104 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	CD33	P20138	364 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	PRRX1	P54821	245 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	LOXL3	P58215	753 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	HLA-DRB5	Q30154	266 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	KRBOX4	Q5JUW0	171 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076		Q6P435	159 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	RNF144B	Q7Z419	303 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	OR5D14	Q8NGL3	314 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	PYDC1	Q8WXC3	89 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	COQ2	Q96H96	371 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	RBM14	Q96PK6	669 aa	Known RBP	13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076	OR6C3	Q9NZP0	311 aa		13.97	□□□□□ -0.17
COL7A1-208	ENST00000470076		A0A1W2PRX2	142 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	FAM172BP	A6NC97	362 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	OOSP1	A8MZH6	123 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076		E9PQ18	207 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	BUB1B-PAK6	H3BSN5	160 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	SLC33A1	O00400	549 aa	Predicted RBP	13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	DEGS1	O15121	323 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	HCK	P08631	526 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	TMEM225B	P0DP42	221 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	DBT	P11182	482 aa	Known RBP	13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	GDNF	P39905	211 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	MNDA	P41218	407 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	ALDH3A2	P51648	485 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	GALE	Q14376	348 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	KISS1	Q15726	138 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	ABCA11P	Q4W5N1	156 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	TPTE2P1	Q5T6R2	138 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	CCDC144NL	Q6NUI1	221 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	SERPINA12	Q8IW75	414 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	SYS1	Q8N2H4	156 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	LGALS12	Q96DT0	336 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	MYRF	Q9Y2G1	1151 aa		13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	TSSC4	Q9Y5U2	329 aa	Predicted RBP	13.96	□□□□□ -0.17
COL7A1-208	ENST00000470076	TCRBV4S1A1T	A0A5B7	111 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	LY6L	H3BQJ8	138 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076		M0QZK8	103 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	SULT1B1	O43704	296 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	LPL	P06858	475 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	MTNR1B	P49286	362 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ZP1	P60852	638 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	MRPL28	Q13084	256 aa	Known RBP	13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ATXN7L3	Q14CW9	347 aa	Predicted RBP	13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	CDK5R1	Q15078	307 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ZIK1	Q3SY52	487 aa	Predicted RBP	13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	TCTEX1D4	Q5JR98	221 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	FOXB2	Q5VYV0	432 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	LHFPL3	Q86UP9	236 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	PARP16	Q8N5Y8	322 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	OR4X2	Q8NGF9	303 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ALG8	Q9BVK2	526 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ING3	Q9NXR8	418 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	ZNF281	Q9Y2X9	895 aa		13.95	□□□□□ -0.18
COL7A1-208	ENST00000470076	KBTBD11-OT1	A0A1B0GTJ5	212 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	TMEM212	A6NML5	194 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	IGLL1	P15814	213 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	OR3A4P	P47883	348 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	C17orf58	Q2M2W7	97 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	CCDC121	Q6ZUS5	278 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	ZNF565	Q8N9K5	539 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	OR51T1	Q8NGJ9	327 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	OR9G1	Q8NH87	305 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	MYDGF	Q969H8	173 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	CPNE2	Q96FN4	548 aa	Predicted RBP	13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	KIRREL1	Q96J84	757 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	PPIL3	Q9H2H8	161 aa	Known RBP	13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	NCOR1P1	Q9H4R4	102 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	PCDHB16	Q9NRJ7	776 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	INPP5E	Q9NRR6	644 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076	GMPPB	Q9Y5P6	360 aa		13.94	□□□□□ -0.18
COL7A1-208	ENST00000470076		H0YJX3	145 aa		13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms