RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 CCDC159P0C7I6 412 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 LIMS3P0CW19 117 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 LIMS4P0CW20 117 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 HTR1DP28221 377 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 GDNFP39905 211 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 GLIPR1P48060 266 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 BDH1Q02338 343 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 AESQ08117 197 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 IL18R1Q13478 541 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 ELP2Q6IA86 826 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 OR52W1Q6IF63 320 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 SERPINA12Q8IW75 414 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 OR5D14Q8NGL3 314 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 OR5AK2Q8NH90 309 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 NDNFQ8TB73 568 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 HAVCR2Q8TDQ0 301 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 RPL36Q9Y3U8 105 aaKnown RBP13.09□□□□□ -0.31
COL9A3-208ENST00000469802 A0A087X0M5 115 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 A0A1B0GX30 115 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 FBXO24O75426 580 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 WBP4O75554 376 aaKnown RBP13.08□□□□□ -0.32
COL9A3-208ENST00000469802 HCKP08631 526 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF44P15621 663 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 CDK2P24941 298 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 MTNR1BP49286 362 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 SLC34A1Q06495 639 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF691Q5VV52 312 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 Q6ZS46 218 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 RTN4RL2Q86UN3 420 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 C1QL4Q86Z23 238 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 ABHD12Q8N2K0 398 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 PXT1Q8NFP0 134 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 PRSS22Q9GZN4 317 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF286AQ9HBT8 521 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 FGF20Q9NP95 211 aaPredicted RBP13.08□□□□□ -0.32
COL9A3-208ENST00000469802 DPM3Q9P2X0 92 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 DHDHQ9UQ10 334 aa13.08□□□□□ -0.32
COL9A3-208ENST00000469802 ADARB2-AS1A8MUL3 147 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 PTGFRP43088 359 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 GBX2P52951 348 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-208ENST00000469802 BLCAPP62952 87 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 ATXN7L3Q14CW9 347 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-208ENST00000469802 C17orf58Q2M2W7 97 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 KRBOX4Q5JUW0 171 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 KPRPQ5T749 579 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-208ENST00000469802 LPCAT4Q643R3 524 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 Q8NFD4 153 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 OR51A2Q8NGJ7 313 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF596Q8TC21 504 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 TSEN15Q8WW01 171 aaKnown RBP13.07□□□□□ -0.32
COL9A3-208ENST00000469802 RDH12Q96NR8 316 aa13.07□□□□□ -0.32
COL9A3-208ENST00000469802 PPIL3Q9H2H8 161 aaKnown RBP13.07□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF729A6NN14 1252 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-208ENST00000469802 EBAG9O00559 213 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 GABRPO00591 440 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 CGB3P0DN86 165 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 CGB7P0DN87 165 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 TMEM225BP0DP42 221 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 CD28P10747 220 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 GTF2A1P52655 376 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-208ENST00000469802 PAX5Q02548 391 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 SCN1BQ07699 218 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 SMN1Q16637 294 aaKnown RBP13.06□□□□□ -0.32
COL9A3-208ENST00000469802 HLA-DRB5Q30154 266 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 BEAN1Q3B7T3 259 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 TMEM95Q3KNT9 176 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 KLHL22Q53GT1 634 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 FBLN7Q53RD9 439 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 UTF1Q5T230 341 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 SAMD5Q5TGI4 173 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 XAF1Q6GPH4 301 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 C16orf82Q7Z2V1 217 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 OR51T1Q8NGJ9 327 aa13.06□□□□□ -0.32
COL9A3-208ENST00000469802 CPNE2Q96FN4 548 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-208ENST00000469802 SMPD3Q9NY59 655 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-208ENST00000469802 TRAV24A0A0B4J272 114 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 FAM172BPA6NC97 362 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 G3V4G9 280 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 LY6LH3BQJ8 138 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 DEGS1O15121 323 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 RAB3AP20336 220 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 IL13RA2Q14627 380 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 CCDC58Q4VC31 144 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 ASCL4Q6XD76 172 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 NDUFA11Q86Y39 141 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 OCSTAMPQ9BR26 566 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 NCOR1P1Q9H4R4 102 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 LINC00574Q9H8X3 128 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 LIN7BQ9HAP6 207 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 TAS2R4Q9NYW5 299 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 OR6C3Q9NZP0 311 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 DNAH3Q8TD57 4116 aa13.05□□□□□ -0.32
COL9A3-208ENST00000469802 NOTCH3Q9UM47 2321 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 KBTBD11-OT1A0A1B0GTJ5 212 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 LEUTXA8MZ59 168 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 H0YJX3 145 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 ALDOBP05062 364 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 DCKP27707 260 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 VDAC2P45880 294 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-208ENST00000469802 ETV1P50549 477 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms