RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MED29Q9NX70 200 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ALKBH4Q9NXW9 302 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 KIAA1456Q9P272 454 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ANXA10Q9UJ72 324 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 PUS1Q9Y606 427 aaKnown RBP eCLIP8.31□□□□□ -1.08
HDAC3-205ENST00000469550 COL12A1Q99715 3063 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 RELNP78509 3460 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 NSG1A0A0A6YYJ2 146 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 H3BQ15 152 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 GPR37O15354 613 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ST8SIA3O43173 380 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 SCGB1D2O95969 90 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 DUSP1P28562 367 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 PPP1CCP36873 323 aaKnown RBP8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF133P52736 654 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-205ENST00000469550 BIDP55957 195 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 SSPNQ14714 243 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 PRR30Q53SZ7 412 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-205ENST00000469550 HIST2H3PS2Q5TEC6 136 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 PLXDC2Q6UX71 529 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 GALNTL5Q7Z4T8 443 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ADPRHL1Q8NDY3 354 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 OR1N1Q8NGS0 311 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 DDIT4LQ96D03 193 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 MVB12AQ96EY5 273 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 FER1L6-AS2Q96M78 137 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 SOX7Q9BT81 388 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 SERINC1Q9NRX5 453 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF319Q9P2F9 582 aa8.31□□□□□ -1.08
HDAC3-205ENST00000469550 SEC16AO15027 2179 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 IGKV1D-8A0A087WSZ0 117 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 LIPT2A6NK58 231 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 DHRS7CA6NNS2 312 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF724A8MTY0 619 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF587BE7ETH6 402 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ETV2O00321 342 aaPredicted RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HSD17B6O14756 317 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PPP1R2P9O14990 202 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ONECUT2O95948 504 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SRP19P09132 144 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 RNF224P0DH78 156 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PAX1P15863 534 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 TAGLN2P37802 199 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PIGPP57054 158 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PKIAP61925 76 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 GRB2P62993 217 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF266Q14584 549 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 UBE2V2Q15819 145 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SPSB3Q6PJ21 355 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 LIAT1Q6ZQX7 453 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 Q6ZSR3 168 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 COMMD2Q86X83 199 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST3H2BBQ8N257 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 CCDC54Q8NEL0 328 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 FAM213BQ8TBF2 198 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 C10orf35Q96D05 121 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 RAB39BQ96DA2 213 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 FAM71F1Q96KD3 344 aaPredicted RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SYT3Q9BQG1 590 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ANGPTL4Q9BY76 406 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SH3BGRL3Q9H299 93 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 NELFAQ9H3P2 528 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PNRC2Q9NPJ4 139 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 COPS7AQ9UBW8 275 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZDHHC8Q9ULC8 765 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 UNC79Q9P2D8 2635 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIVEP3Q5T1R4 2406 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 B4DEV8 164 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BKO60814 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 RAMP1O60894 148 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 PTBP3O95758 552 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HSPB1P04792 205 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BJP06899 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HEXBP07686 556 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 OR5H8P0DN80 308 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BOP23527 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 DTYMKP23919 212 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BBP33778 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 OR1D4P47884 311 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BDP58876 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 UBE2KP61086 200 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST1H2BCP62807 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 C17orf67Q0P5P2 114 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST2H2BEQ16778 126 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 ZNF674Q2M3X9 581 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 DCAF10Q5QP82 559 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 MRPL14Q6P1L8 145 aaKnown RBP8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SLC25A47Q6Q0C1 308 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SSX9Q7RTT3 188 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 C1QL2Q7Z5L3 287 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 SLC35E3Q7Z769 313 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 LGI3Q8N145 548 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 HSD17B11Q8NBQ5 300 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 OR10G4Q8NGN3 311 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 OR10D4PQ8NGN7 298 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 OR2Y1Q8NGV0 311 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 M1APQ8TC57 530 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 Q8WTZ3 238 aa8.3□□□□□ -1.08
HDAC3-205ENST00000469550 RTN4IP1Q8WWV3 396 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms