RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FGF2P09038 288 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 BMP5P22003 454 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 PABPC1L2AQ5JQF8 200 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 DCAF12L2Q5VW00 463 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 FAM219AQ8IW50 185 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 IGHV1OR21-1A0A087WYE8 117 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 FAM74A7A6NL05 159 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 COL19A1Q14993 1142 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 FAM78BQ5VT40 261 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 POM121Q96HA1 1249 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 HES7Q9BYE0 225 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 FAM60AQ9NP50 221 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 SLC2A9Q9NRM0 540 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 MIA3Q5JRA6 1907 aa16.76■□□□□ 0.27
CCDC88B-204ENST00000463837 F12P00748 615 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 KIR3DL2P43630 455 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 NHLRC3Q5JS37 347 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 GFRALQ6UXV0 394 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 M0R1X1 148 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 RAB7AP51149 207 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 FZD5Q13467 585 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 KHDC3LQ587J8 217 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 ACY3Q96HD9 319 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 GNB4Q9HAV0 340 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 M0R1B8 84 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 SRD5A2P31213 254 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 MSL2Q9HCI7 577 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 SPAG17Q6Q759 2223 aa16.75■□□□□ 0.27
CCDC88B-204ENST00000463837 PPYP01298 95 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 USF1P22415 310 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 NSUN5P2Q63ZY6 315 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 RGP1Q92546 391 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 SNX22Q96L94 193 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 PITX3O75364 302 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 C1QL3Q5VWW1 255 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 PET117Q6UWS5 81 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 VASH2Q86V25 355 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 ZNF383Q8NA42 475 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 KISS1RQ969F8 398 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 KIAA1456Q9P272 454 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 CHST1O43916 411 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 TMEM56Q96MV1 263 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 RNASEKQ6P5S7 137 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 FKBP11Q9NYL4 201 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 ZMIZ1Q9ULJ6 1067 aa16.74■□□□□ 0.27
CCDC88B-204ENST00000463837 MPTX1A8MV57 137 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 GYPAP02724 150 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 WDR61Q9GZS3 305 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 A0A1B0GU03 582 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 UBE2V2Q15819 145 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 ETV3LQ6ZN32 361 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 RNF2Q99496 336 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 CHST5Q9GZS9 411 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 ZP4Q12836 540 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 UNQ9370/PRO34162Q6UXP9 181 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 SARGQ9BW04 601 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 SLC26A1Q9H2B4 701 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 TIMM9Q9Y5J7 89 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 RPL11P62913 178 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 ZNF154Q13106 437 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 MPV17LQ2QL34 196 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 ETFRF1Q6IPR1 90 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 FA2HQ7L5A8 372 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 C1orf210Q8IVY1 113 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 CRYM-AS1A6NIL9 109 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 ASAH2BP0C7U1 165 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 PRSS12P56730 875 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 SPEM2Q0P670 501 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 WIPI1Q5MNZ9 446 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 C16orf47Q6ZP98 133 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 PUSL1Q8N0Z8 303 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 SDHCQ99643 169 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 SH2D2AQ9NP31 389 aa16.73■□□□□ 0.27
CCDC88B-204ENST00000463837 MMP9P14780 707 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 MUC1P15941 1255 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 ACSM6Q6P461 480 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 SLC25A38Q96DW6 304 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 BARX1Q9HBU1 254 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 TMEM167BQ9NRX6 74 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 GPR27Q9NS67 375 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 RAC3P60763 192 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 RHBDD2Q6NTF9 364 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 BET1LQ9NYM9 111 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 KLHDC2Q9Y2U9 406 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 MRPS18BQ9Y676 258 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 SIGLEC5O15389 551 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 SIGLEC14Q08ET2 396 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 GUCA2BQ16661 112 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 GNRHR2Q96P88 292 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 PLA2G2FQ9BZM2 168 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 NPDC1Q9NQX5 325 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 PDE6DO43924 150 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 CRISP2P16562 243 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 PAX5Q02548 391 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 DHRS13Q6UX07 377 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 LINC00596Q86U02 117 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 ADAMTS17Q8TE56 1095 aa16.72■□□□□ 0.27
CCDC88B-204ENST00000463837 TRGV5A0A0B4J1U4 118 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 OR10J1P30954 320 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 FUT5Q11128 374 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms