RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 IL36GQ9NZH8 169 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 SF3B6Q9Y3B4 125 aaKnown RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 FAM96BQ9Y3D0 163 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 SOX21Q9Y651 276 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 A0A0G2JK05 382 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 MDFIC2A0A1B0GVS7 189 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 MAGEA13PA6NCF6 341 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 DNAJC9-AS1A6NH13 148 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 NPFFO15130 113 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 PIN1P1O15428 100 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 SERPINA2P20848 420 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 ERP29P30040 261 aaKnown RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 UBE2E1P51965 193 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 P2RX3P56373 397 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 UBA52P62987 128 aaKnown RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 ACTG1P63261 375 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 PRB3Q04118 309 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 KLRD1Q13241 179 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 TPBGQ13641 420 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 Q6P435 159 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 UNQ9370/PRO34162Q6UXP9 181 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 CEACAM19Q7Z692 300 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 TRAPPC6BQ86SZ2 158 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 OSR2Q8N2R0 312 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 SVOPQ8N4V2 548 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 Q8NFD4 153 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 OR51T1Q8NGJ9 327 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 TNFRSF14Q92956 283 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 MUL1Q969V5 352 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 ZNF714Q96N38 554 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 MGLLQ99685 303 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 YTHDF1Q9BYJ9 559 aaKnown RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 SLITRK2Q9H156 845 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 PPA2Q9H2U2 334 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 HEXA-AS1Q9H8Q6 139 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 ESM1Q9NQ30 184 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 MRPS28Q9Y2Q9 187 aaKnown RBP9.38□□□□□ -0.91
COL28A1-203ENST00000435823 LINC00312Q9Y6C7 94 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 COL6A5A8TX70 2615 aa9.38□□□□□ -0.91
COL28A1-203ENST00000435823 CUBNO60494 3623 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 TRGV10A0A0A0MS01 117 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 A0A0U1RQK1 487 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 A0A1W2PRD5 423 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 A0A1W2PRF3 423 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 A0A1W2PRM7 423 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 C17orf98A8MV24 154 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 SLC33A1O00400 549 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-203ENST00000435823 PAHP00439 452 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 RBP4P02753 201 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 CSN2P05814 226 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 FBP1P09467 338 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 ZNF728P0DKX0 622 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 CPEP16870 476 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 DLX1P56177 255 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 RPS25P62851 125 aaKnown RBP9.37□□□□□ -0.91
COL28A1-203ENST00000435823 INSL4Q14641 139 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 PIGYQ3MUY2 71 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 SLC22A6Q4U2R8 563 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 HSD17B12Q53GQ0 312 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 PAN3Q58A45 887 aaKnown RBP9.37□□□□□ -0.91
COL28A1-203ENST00000435823 NHLRC3Q5JS37 347 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 GLT8D1Q68CQ7 371 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 AWAT2Q6E213 333 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 GLIPR1L1Q6UWM5 242 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 Q6YL49 198 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 LINC00596Q86U02 117 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 TPRX1Q8N7U7 411 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 PHYHIPQ92561 330 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 TMEM203Q969S6 136 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 SLC25A28Q96A46 364 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 FOXRED1Q96CU9 486 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-203ENST00000435823 DUX5Q96PT3 197 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 UQCC2Q9BRT2 126 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 GAL3ST2Q9H3Q3 398 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 PRDM13Q9H4Q3 707 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 ACOT13Q9NPJ3 140 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 ST3GAL6Q9Y274 331 aa9.37□□□□□ -0.91
COL28A1-203ENST00000435823 UBE2J1Q9Y385 318 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-203ENST00000435823 MEX3AA1L020 520 aaKnown RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 MEIOCA2RUB1 952 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 CLDN34H7C241 214 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 HOXA3O43365 443 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 SC5DO75845 299 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 ARL6IP5O75915 188 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 OR7C1O76099 320 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 RNASE1P07998 156 aaKnown RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 UCHL1P09936 223 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 GTF2F2P13984 249 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 SRMP19623 302 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 COX7A1P24310 79 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 SMCPP49901 116 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 DLX6P56179 175 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 RBM11P57052 281 aaKnown RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 AESQ08117 197 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 ATXN7L3Q14CW9 347 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-203ENST00000435823 SLC9A3R2Q15599 337 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 MPV17LQ2QL34 196 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 MIDNQ504T8 468 aa9.36□□□□□ -0.91
COL28A1-203ENST00000435823 KRBOX4Q5JUW0 171 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 181.1 ms