RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CLDN23Q96B33 292 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 IMP4Q96G21 291 aaKnown RBP3.18□□□□□ -1.9
HMGB1-204ENST00000399489 BTF3L4Q96K17 158 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 BTN2A3PQ96KV6 586 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 RGS18Q9NS28 235 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 VPS29Q9UBQ0 182 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 UFC1Q9Y3C8 167 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 ARHGEF5Q12774 1597 aa3.18□□□□□ -1.9
HMGB1-204ENST00000399489 EIF2AK4Q9P2K8 1649 aaKnown RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 IGHV4-30-2A0A087WSY4 118 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 A0A0G2JMP0 313 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CENPVL3A0A0U1RRI6 287 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CLDN24A6NM45 220 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 GPR31O00270 319 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 PHYHO14832 338 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SLC22A1O15245 554 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 DLEU1O43261 78 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 PLIN3O60664 434 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SLC25A27O95847 323 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 IGKV1D-16P01601 117 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 THY1P04216 161 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 GIPP09681 153 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SLC35G6P0C7Q6 338 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 HTR1EP28566 365 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 IL2RGP31785 369 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 PYCR1P32322 319 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 BTCP35070 178 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 VDAC2P45880 294 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 GCLMP48507 274 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CDKN2DP55273 166 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 PFN3P60673 137 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SELENOTP62341 195 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ARG2P78540 354 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 FMODQ06828 376 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CLEC12BQ2HXU8 276 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF630Q2M218 657 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SMIM21Q3B7S5 101 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CDNFQ49AH0 187 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 C1orf100Q5SVJ3 147 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 KCTD16Q68DU8 428 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 WDR74Q6RFH5 385 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF620Q6ZNG0 422 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 GRINAQ7Z429 371 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 LRRC25Q8N386 305 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SMIM20Q8N5G0 67 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 NUP37Q8NFH4 326 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 OR4M2Q8NGB6 313 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 Q8WTZ3 238 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ABHD3Q8WU67 409 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SKA2Q8WVK7 121 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 DNAJC9Q8WXX5 260 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 UCN3Q969E3 161 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 PPCDCQ96CD2 204 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ARHGDIGQ99819 225 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 VPS25Q9BRG1 176 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 MND1Q9BWT6 205 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 TXNIPQ9H3M7 391 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SRMSQ9H3Y6 488 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 VSIRQ9H7M9 311 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 TPT1P8Q9HAU6 139 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SPANXA1Q9NS26 97 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 COA4Q9NYJ1 87 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 COMMD9Q9P000 198 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 RAB22AQ9UL26 194 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 ADGRB3O60242 1522 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 LMTK2Q8IWU2 1503 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 MYOM2P54296 1465 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CEP152O94986 1710 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 CHD2O14647 1828 aaKnown RBP3.17□□□□□ -1.9
HMGB1-204ENST00000399489 TAF1LQ8IZX4 1826 aa3.17□□□□□ -1.9
HMGB1-204ENST00000399489 MPTX1A8MV57 137 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF878C9JN71 531 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 H7C417 338 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 M0QYV0 167 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 MFNGO00587 321 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 PDE6DO43924 150 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 CNMDO75829 334 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR2J2O76002 312 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 HAND1O96004 215 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 IFNGP01579 166 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 S100A8P05109 93 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 CD1EP15812 388 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 GZMHP20718 246 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OMGP23515 440 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 CXCR1P25024 350 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SDC4P31431 198 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 AKR1C3P42330 323 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TCTAP57738 103 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 GNG3P63215 75 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SLC7A9P82251 487 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 EDDM3AQ14507 147 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 MPPED2Q15777 294 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 TMEM97Q5BJF2 176 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 SLC35E4Q6ICL7 350 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 FAM53AQ6NSI3 398 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-204ENST00000399489 LPCAT3Q6P1A2 487 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 UNQ9370/PRO34162Q6UXP9 181 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 AQP11Q8NBQ7 271 aa3.16□□□□□ -1.9
HMGB1-204ENST00000399489 OR10AD1Q8NGE0 317 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms