RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EMG1Q92979 244 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM203Q969S6 136 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 OCSTAMPQ9BR26 566 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 CSMD1Q96PZ7 3565 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 FUOMA2VDF0 154 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 SERPINE3A8MV23 424 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 C22orf46C9J442 243 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 GSTZ1O43708 216 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 APOA1P02647 267 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 MAS1P04201 325 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ARSBP15848 533 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 FUT3P21217 361 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RORCP51449 518 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 HABP2Q14520 560 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 PLAC9Q5JTB6 97 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 SUMF2Q8NBJ7 301 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF439Q8NDP4 499 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 OR56B1Q8NGI3 324 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 MRPL30Q8TCC3 161 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 DEDD2Q8WXF8 326 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 CHST6Q9GZX3 395 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 MIXL1Q9H2W2 232 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 LIN7BQ9HAP6 207 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RSL24D1Q9UHA3 163 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RBMX2Q9Y388 322 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 AK6Q9Y3D8 172 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 PLCE1Q9P212 2302 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 CACNA1DQ01668 2161 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RFPL4AA6NLU0 287 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF729A6NN14 1252 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RFPL4AL1F8VTS6 287 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 LY6LH3BQJ8 138 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 PPIHO43447 177 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 XRCC3O43542 346 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ENSAO43768 121 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 NXPH2O95156 264 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 GYPAP02724 150 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 CLEC2LP0C7M8 214 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 POU3F4P49335 361 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 NCS1P62166 190 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 FAM71F2Q6NXP2 309 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 LURAP1LQ8IV03 231 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 TRMT10AQ8TBZ6 339 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 MSI2Q96DH6 328 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF488Q96MN9 340 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 CHCHD6Q9BRQ6 235 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 DPCDQ9BVM2 203 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 PECRQ9BY49 303 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 IL36RNQ9UBH0 155 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 MT-ND4P03905 459 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 SEC61A1P61619 476 aaKnown RBP5.77□□□□□ -1.49
LIMA1-202ENST00000394943 PLA2G7Q13093 441 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RSU1Q15404 277 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 AWAT2Q6E213 333 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 NLRC3Q7RTR2 1065 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 RTN4RL2Q86UN3 420 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 OR10R2Q8NGX6 335 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 NDNFQ8TB73 568 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ST3GAL6Q9Y274 331 aa5.77□□□□□ -1.49
LIMA1-202ENST00000394943 ANKRD17O75179 2603 aaKnown RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 A0A1B0GW55 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L2P0CJ85 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L3P0CJ86 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L4P0CJ87 422 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L5P0CJ88 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L6P0CJ89 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L7P0CJ90 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 PRKACAP17612 351 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 PRTN3P24158 256 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 RBM39Q14498 530 aaKnown RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 LRRC10Q5BKY1 277 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 FAM201AQ5SY85 155 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4L9Q6RFH8 374 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 C1orf229Q6ZS94 237 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 LDLRAD3Q86YD5 345 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 CADM3Q8N126 398 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 PLPPR1Q8TBJ4 325 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM186Q96B77 213 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM59Q9BXS4 323 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DCSTAMPQ9H295 470 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 DUX4Q9UBX2 424 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 SLC25A10Q9UBX3 287 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 CADP27708 2225 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 GEMIN2O14893 280 aaKnown RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 ANGPTL7O43827 346 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 INHBBP09529 407 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM225BP0DP42 221 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 CD99P14209 185 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TGFBR1P36897 503 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 VBP1P61758 197 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 KRTAP21-3Q3LHN1 58 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 PIGYQ3MUY2 71 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TMEM200BQ69YZ2 307 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 HEPN1Q6WQI6 88 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 BEND2Q8NDZ0 799 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 PPP1R35Q8TAP8 253 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 AP3S1Q92572 193 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 TBX15Q96SF7 602 aa5.76□□□□□ -1.49
LIMA1-202ENST00000394943 URM1Q9BTM9 101 aaKnown RBP5.76□□□□□ -1.49
LIMA1-202ENST00000394943 UFSP2Q9NUQ7 469 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms