RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SNHG12Q9BXW3 62 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 GPR35Q9HC97 309 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 PLA2G3Q9NZ20 509 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 LRRC3CA6NJW4 275 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF850A8MQ14 1090 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SPRY1O43609 319 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ADAP1O75689 374 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SYNGR4O95473 234 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SFTPBP07988 381 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 HOXB5P09067 269 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 HIST1H1BP16401 226 aaKnown RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 FOXO1Q12778 655 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 RSPO4Q2I0M5 234 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 PLA2G2CQ5R387 149 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 UNQ6126/PRO20091Q6UXV3 157 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 EIF4E3Q8N5X7 224 aaKnown RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 DEFB124Q8NES8 71 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 C2orf50Q96LR7 162 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF2Q9BSG1 426 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 OR2H1Q9GZK4 316 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 BCO1Q9HAY6 547 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 C1orf123Q9NWV4 160 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 FAM221AA4D161 298 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 C21orf140B9A014 251 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 IFNA2P01563 188 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ACKR3P25106 362 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 OR2B8PP59922 312 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 S100A10P60903 97 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 PSG4Q00888 419 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 PLCXD3Q63HM9 321 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ABLIM2Q6H8Q1 611 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 H3F3CQ6NXT2 135 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 NAXEQ8NCW5 288 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SLC39A7Q92504 469 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 PIGCQ92535 297 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 KCNIP3Q9Y2W7 256 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 FAM166BA8MTA8 275 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 XRCC2O43543 280 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF14P17017 642 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 EIF5AP63241 154 aaKnown RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ZSCAN4Q8NAM6 433 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 FER1L6-AS2Q96M78 137 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 FAM173AQ9BQD7 235 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 RTBDNQ9BSG5 229 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-204ENST00000392003 ACKR4Q9NPB9 350 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 PARPBPQ9NWS1 579 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SPTBN2O15020 2390 aa8.37□□□□□ -1.07
COL6A3-204ENST00000392003 SCGB1D2O95969 90 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 FUT6P51993 359 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ABCA11PQ4W5N1 156 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 PDZD11Q5EBL8 140 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 AADACL3Q5VUY0 350 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 NSUN5P2Q63ZY6 315 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 PRSS54Q6PEW0 395 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 FAAP24Q9BTP7 215 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 WDR13Q9H1Z4 485 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 NECAP2Q9NVZ3 263 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 CLEC5AQ9NY25 188 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ANXA10Q9UJ72 324 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 FOXI3A8MTJ6 420 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-204ENST00000392003 GALR2O43603 387 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-204ENST00000392003 OR5H8P0DN80 308 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ANKRD55Q3KP44 614 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 LBHQ53QV2 105 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ARSJQ5FYB0 599 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-204ENST00000392003 DCAF10Q5QP82 559 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF585AQ6P3V2 769 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 C5orf24Q7Z6I8 188 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 OSR2Q8N2R0 312 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 FNDC9Q8TBE3 224 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ABHD3Q8WU67 409 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 MICU1Q9BPX6 476 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 TLNRD1Q9H1K6 362 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 DEPPQ9NTK1 212 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 PRR13Q9NZ81 148 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 MCTS1Q9ULC4 181 aaKnown RBP8.36□□□□□ -1.07
COL6A3-204ENST00000392003 HSF4Q9ULV5 492 aa8.36□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF816-ZNF321PA0A0X1KG74 233 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 PKIAP61925 76 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 SRSF3P84103 164 aaKnown RBP8.35□□□□□ -1.07
COL6A3-204ENST00000392003 MALLQ13021 153 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 OR1C1Q15619 314 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 RPUSD3Q6P087 351 aaKnown RBP8.35□□□□□ -1.07
COL6A3-204ENST00000392003 BAP18Q8IXM2 172 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 OR10A7Q8NGE5 316 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 R3HDM4Q96D70 268 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 C14orf79Q96F83 325 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 PIK3IP1Q96FE7 263 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 ADGRG7Q96K78 797 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 TECTBQ96PL2 329 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 PIGMQ9H3S5 423 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 SPAARA0A1B0GVQ0 90 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 TSTD3H0UI37 97 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 IGHV3-9P01782 118 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 CTSDP07339 412 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-204ENST00000392003 DTYMKP23919 212 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 PAX6P26367 422 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 OPRM1P35372 400 aa8.35□□□□□ -1.07
COL6A3-204ENST00000392003 GLP1RP43220 463 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms