RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 PROK2Q9HC23 129 aa15.36■□□□□ 0.05
SQSTM1-202ENST00000389805 TMED3Q9Y3Q3 217 aa15.36■□□□□ 0.05
SQSTM1-202ENST00000389805 FAM24AA6NFZ4 105 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 CRYM-AS1A6NIL9 109 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 AQP7P3A6NL99 342 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 LMO1P25800 156 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 SUCLG1P53597 346 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 RAET1LQ5VY80 246 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 ZNF283Q8N7M2 679 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 OR5L1Q8NGL2 311 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 RBM14Q96PK6 669 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 NUDT16L1Q9BRJ7 211 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 C2orf88Q9BSF0 95 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 DCAF16Q9NXF7 216 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 FBLN5Q9UBX5 448 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 AK3Q9UIJ7 227 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 TP53I11O14683 189 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 SCAF4O95104 1147 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 TMEM225BP0DP42 221 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 COX6A1P12074 109 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 ATP6V0CP27449 155 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 OPRM1P35372 400 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 LPAL2Q16609 132 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 SPSB3Q6PJ21 355 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 LFNGQ8NES3 379 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 FAM210BQ96KR6 192 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 IMMP1LQ96LU5 166 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 NEU1Q99519 415 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 SLC25A31Q9H0C2 315 aa15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 COLQQ9Y215 455 aaPredicted RBP15.35■□□□□ 0.05
SQSTM1-202ENST00000389805 TMEM265A0A087WTH1 108 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 IGKV1-9A0A0C4DH69 117 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 STMND1H3BQB6 276 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 RPL36A-HNRNPH2H7BZ11 118 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 ZNF664Q8N3J9 261 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 NIPSNAP3BQ9BS92 247 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 ZNF160Q9HCG1 818 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 FOXD3Q9UJU5 478 aaPredicted RBP15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 WSB1Q9Y6I7 421 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 GPR179Q6PRD1 2367 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 ELOA3CA0A087WX78 387 aaPredicted RBP15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 F5H5K5 113 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 SOX15O60248 233 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 IFNA10P01566 189 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 ZNF837Q96EG3 531 aaPredicted RBP15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 TVP23CQ96ET8 276 aa15.34■□□□□ 0.05
SQSTM1-202ENST00000389805 EREGO14944 169 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 ZIC3O60481 467 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 RPS18P62269 152 aaKnown RBP15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 IL11RAQ14626 422 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 HIST3H3Q16695 136 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 TMEM68Q96MH6 324 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 AHCTF1Q8WYP5 2266 aa15.33■□□□□ 0.05
SQSTM1-202ENST00000389805 LOC102723996A0A087X1L8 192 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 DBHP09172 617 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 ABCA11PQ4W5N1 156 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 RTN4IP1Q8WWV3 396 aaPredicted RBP15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 PRRC2CQ9Y520 2896 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 FAM221AA4D161 298 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 TNFSF12O43508 249 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 NR2C1P13056 603 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 FUT3P21217 361 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 GLIPR1P48060 266 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 RUNX1Q01196 453 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 ZNF880Q6PDB4 577 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 BRICD5Q6PL45 260 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 MEX3BQ6ZN04 569 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 AGBL5Q8NDL9 886 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 ADPRHL1Q8NDY3 354 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 ZNF581Q9P0T4 197 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 HSF4Q9ULV5 492 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 SLC7A11Q9UPY5 501 aa15.33■□□□□ 0.04
SQSTM1-202ENST00000389805 ZNF850A8MQ14 1090 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 A8MWP6 167 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 NXPH3O95157 252 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 CTSDP07339 412 aaPredicted RBP15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 ICAM4Q14773 271 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 C5orf24Q7Z6I8 188 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 TMEM123Q8N131 208 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 OR11L1Q8NGX0 322 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 M1APQ8TC57 530 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 RBM24Q9BX46 236 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 WDR54Q9H977 334 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 PLEKHJ1Q9NW61 149 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 H3F3AP84243 136 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 EWSR1Q01844 656 aaKnown RBP eCLIP15.32■□□□□ 0.043e-8■■■□□ 18.8
SQSTM1-202ENST00000389805 KISS1Q15726 138 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 TMEM217Q8N7C4 229 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 DYRK2Q92630 601 aa15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 THOC3Q96J01 351 aaKnown RBP15.32■□□□□ 0.04
SQSTM1-202ENST00000389805 C9J4A7 227 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 ST8SIA3O43173 380 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 PRSS12P56730 875 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 TRIM61Q5EBN2 209 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 MRPL37Q9BZE1 423 aaKnown RBP15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 MAGT1Q9H0U3 335 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 NCOR1O75376 2440 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 A0A0G2JMM0 328 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 A0A1W2PPB8 328 aa15.31■□□□□ 0.04
SQSTM1-202ENST00000389805 A0A1W2PRS3 328 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms