RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MARCH3Q86UD3 253 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 LRRC75AQ8NAA5 344 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 GLIS1Q8NBF1 620 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 OR10AC1Q8NH08 325 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 DTLQ9NZJ0 730 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 CORINQ9Y5Q5 1042 aa4.15□□□□□ -1.75
SCN1A-202ENST00000375405 ALPK2Q86TB3 2170 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 KIR2DS5A0A0G2JLQ3 304 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 A0A0G2JNG1 304 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 B4DEV8 164 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 KIR2DS3K7RE56 304 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ALOX5APP20292 161 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MMDQ15546 238 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DUSP5Q16690 384 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 FAM159AQ6UWV7 190 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 C12orf54Q6X4T0 127 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 OR4C3Q8NH37 302 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CLDN23Q96B33 292 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 C8orf44Q96CB5 159 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF300Q96RE9 604 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 GTSF1LQ9H1H1 148 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SMOC2Q9H3U7 446 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 PDZD7Q9H5P4 517 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ACER3Q9NUN7 267 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 LHX3Q9UBR4 397 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 A0A087WX48 190 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ATP5LO75964 103 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CD1DP15813 335 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 HIST1H1CP16403 213 aaKnown RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CSF2RBP32927 897 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 KRTCAP3Q53RY4 240 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 FAM209AQ5JX71 171 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 PTOV1Q86YD1 416 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 OR9Q2Q8NGE9 314 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 KIR2DL4Q99706 377 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLA2Q9H6Q3 261 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DKK4Q9UBT3 224 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 HSPB7Q9UBY9 170 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 RCE1Q9Y256 329 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 FZD9O00144 591 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NCR2O95944 276 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 FAM106CPP0CH98 169 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CNR2P34972 360 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DEGS2Q6QHC5 323 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 THAP8Q8NA92 274 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF385AQ96PM9 386 aaKnown RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM70Q9BUB7 260 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 GGTLC1Q9BX51 225 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A2Q9BXI2 301 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZDHHC18Q9NUE0 388 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TMED7-TICAM2A0A0A6YYA0 188 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLC17A2O00624 439 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 KLF4O43474 513 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF354AO60765 605 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TRGC2P03986 189 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SOD2P04179 222 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TSPOP30536 169 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NTHL1P78549 312 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MS4A13Q5J8X5 152 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SPRYD7Q5W111 196 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 Q7L0L9 218 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 BIVMQ86UB2 503 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF680Q8NEM1 530 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A46Q96AG3 418 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TM4SF19Q96DZ7 209 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MRGPRX4Q96LA9 322 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SPACA5Q96QH8 159 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 UQCC2Q9BRT2 126 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLC46A2Q9BY10 475 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 VN1R1Q9GZP7 353 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TMED7Q9Y3B3 224 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 HS3ST3B1Q9Y662 390 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MED12LQ86YW9 2145 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 EML2O95834 649 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SNRPBP14678 240 aaKnown RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DCTDP32321 178 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 PAX2Q02962 417 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 PET117Q6UWS5 81 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF114Q8NC26 417 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NDUFB11Q9NX14 153 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CACNG5Q9UF02 275 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ETV7Q9Y603 341 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MYO16Q9Y6X6 1858 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 A0A087X0M5 115 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 A0A1B0GX30 115 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM30CPA0ZSE6 113 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NID1P14543 1247 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 REG1BP48304 166 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TIAL1Q01085 375 aaKnown RBP eCLIP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SRSF1Q07955 248 aaKnown RBP eCLIP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF252P-AS1Q0IIN9 211 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 APOBEC3HQ6NTF7 200 aaKnown RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DLEU7Q6UYE1 221 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM256Q8N2U0 113 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NKX6-2Q9C056 277 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 HEXA-AS1Q9H8Q6 139 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 WDR54Q9H977 334 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 TIMM10BQ9Y5J6 103 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NWD1Q149M9 1564 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms