RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 P04436 131 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 IFNA4P05014 189 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 RAB5AP20339 215 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 ATP6V0CP27449 155 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OTX1P32242 354 aaPredicted RBP10.48□□□□□ -0.73
CLIP3-201ENST00000360535 GPM6AP51674 278 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 RAC1P63000 192 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 Q6ZPA2 131 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 LHFPL2Q6ZUX7 228 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 TBC1D26Q86UD7 250 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 VASH2Q86V25 355 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 SPEM1Q8N4L4 309 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF561Q8N587 486 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OR2C3Q8N628 320 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OR5C1Q8NGR4 320 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 SUCNR1Q9BXA5 334 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 TMEM38BQ9NVV0 291 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 FOXD3Q9UJU5 478 aaPredicted RBP10.48□□□□□ -0.73
CLIP3-201ENST00000360535 RRP8O43159 456 aaKnown RBP10.48□□□□□ -0.73
CLIP3-201ENST00000360535 PDCD6O75340 191 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OR2C1O95371 312 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 SEC11BP0C7V7 166 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 HAAOP46952 286 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 PDZD11Q5EBL8 140 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF343Q6P1L6 599 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 DMBX1Q8NFW5 382 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OR51H1Q8NH63 302 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 IL1F10Q8WWZ1 152 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 EXTL1Q92935 676 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 PBDC1Q9BVG4 233 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 SLC35B3Q9H1N7 401 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 LIPGQ9Y5X9 500 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 LY6G6EA0A0G2JKS1 128 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 IGSF23A1L1A6 192 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 HS3ST1O14792 307 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 MPPED1O15442 326 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 DKK1O94907 266 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 COX6A1P12074 109 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 BCL3P20749 454 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 CRYGSP22914 178 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 C17orf78Q8N4C9 275 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 CCDC71LQ8N9Z2 235 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 OR10D3Q8NH80 312 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF488Q96MN9 340 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 DUSP23Q9BVJ7 150 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 U3KQA8 63 aa10.48□□□□□ -0.73
CLIP3-201ENST00000360535 SVILO95425 2214 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 H7C1Q1 480 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 CBR3O75828 277 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF16P17020 682 aaPredicted RBP10.47□□□□□ -0.73
CLIP3-201ENST00000360535 GDF1P27539 372 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 GAPTQ8N292 157 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 ANGPTL4Q9BY76 406 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 LOC102725191A0A1B0GVB3 256 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF724A8MTY0 619 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 TOX3O15405 576 aaPredicted RBP10.47□□□□□ -0.73
CLIP3-201ENST00000360535 NDUFS6O75380 124 aaKnown RBP10.47□□□□□ -0.73
CLIP3-201ENST00000360535 YIF1AO95070 293 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 HLA-HP01893 362 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 FUT3P21217 361 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF154Q13106 437 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 LPAL2Q16609 132 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 PRR14LQ5THK1 2151 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 DPPA2Q7Z7J5 298 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 OR56B2PQ8NGI1 322 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 RDH5Q92781 318 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 TCEAL3Q969E4 200 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 C18orf12Q96KH6 178 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 WNT5BQ9H1J7 359 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 CCL28Q9NRJ3 127 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 CRIM1Q9NZV1 1036 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 NCKAP5O14513 1909 aa10.47□□□□□ -0.73
CLIP3-201ENST00000360535 H0YL77 283 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 DTYMKP23919 212 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 DYNLT3P51808 116 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 GINS3Q9BRX5 216 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 OR2H1Q9GZK4 316 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 ADAMTS20P59510 1910 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 A0A087WZY1 265 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 C5orf52A6NGY3 159 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 TAGLN2P37802 199 aaKnown RBP10.46□□□□□ -0.73
CLIP3-201ENST00000360535 FUT6P51993 359 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 RBM11P57052 281 aaKnown RBP10.46□□□□□ -0.73
CLIP3-201ENST00000360535 RAC3P60763 192 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF818PQ6ZRF7 136 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 TMEM171Q8WVE6 324 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 MOB3AQ96BX8 217 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 CALHM2Q9HA72 323 aa10.46□□□□□ -0.73
CLIP3-201ENST00000360535 IGKV1D-13A0A0B4J2D9 117 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 C5orf49A4QMS7 147 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 TERTO14746 1132 aaKnown RBP10.46□□□□□ -0.74
CLIP3-201ENST00000360535 KLF7O75840 302 aaPredicted RBP10.46□□□□□ -0.74
CLIP3-201ENST00000360535 TK1P04183 234 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 IGKV1-13P0DP09 117 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 EDN3P14138 238 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 FKBP2P26885 142 aaKnown RBP10.46□□□□□ -0.74
CLIP3-201ENST00000360535 FOXG1P55316 489 aaPredicted RBP10.46□□□□□ -0.74
CLIP3-201ENST00000360535 NDUFA6P56556 154 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF674Q2M3X9 581 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 GPR157Q5UAW9 335 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms