RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ARL11Q969Q4 196 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 SMIM8Q96KF7 97 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 TMEM231Q9H6L2 316 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 Q9N2K0 584 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 RCC2Q9P258 522 aaKnown RBP13.23□□□□□ -0.29
UPF3B-202ENST00000345865 SPRR3Q9UBC9 169 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 ZDHHC8Q9ULC8 765 aa13.23□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A10PA6NDY2 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A18PA6NE21 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A16PA6NEW6 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A20PA6NIJ5 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A8PA6NJQ4 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A7PA6NKC0 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A22PA8MWA6 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A12PA8MX19 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A5PA8MXJ8 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A23PA8MXZ1 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 KLRC4-KLRK1H3BQV0 150 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 PHF1O43189 567 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FBXO24O75426 580 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 ATG12O94817 140 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A15PP0C7V4 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A13PP0C7W8 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A14PP0C7W9 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FAM90A24PP0C7X0 464 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 GLP1RP43220 463 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 LPAR6P43657 344 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 GUCA2BQ16661 112 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 SAXO1Q8IYX7 474 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 WDYHV1Q96HA8 205 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 GPHA2Q96T91 129 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 HRH4Q9H3N8 390 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 DSPP15924 2871 aaKnown RBP13.22□□□□□ -0.29
UPF3B-202ENST00000345865 KCNJ3P48549 501 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 HERV-K104P61576 105 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 SMCO1Q147U7 214 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 MCEMP1Q8IX19 187 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 POM121Q96HA1 1249 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 FER1L6-AS2Q96M78 137 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 ADAT1Q9BUB4 502 aaKnown RBP13.22□□□□□ -0.29
UPF3B-202ENST00000345865 MMP26Q9NRE1 261 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 PLSCR2Q9NRY7 297 aa13.22□□□□□ -0.29
UPF3B-202ENST00000345865 ARGFXA6NJG6 315 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 HAGHLQ6PII5 290 aaPredicted RBP13.21□□□□□ -0.29
UPF3B-202ENST00000345865 C20orf204Q6ZNR8 217 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 TMPRSS7Q7RTY8 843 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 SLC35G3Q8N808 338 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 OR5A2Q8NGI9 324 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 OR5P3Q8WZ94 311 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 USB1Q9BQ65 265 aaKnown RBP13.21□□□□□ -0.29
UPF3B-202ENST00000345865 SYT3Q9BQG1 590 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 NKX6-2Q9C056 277 aaPredicted RBP13.21□□□□□ -0.29
UPF3B-202ENST00000345865 DMXL1Q9Y485 3027 aa13.21□□□□□ -0.29
UPF3B-202ENST00000345865 IGKV1-6A0A0C4DH72 117 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 MPPED1O15442 326 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 ID4P47928 161 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 PLP2Q04941 152 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 MEX3BQ6ZN04 569 aaKnown RBP13.21□□□□□ -0.3
UPF3B-202ENST00000345865 Q6ZS49 121 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 MYPOPQ86VE0 399 aaPredicted RBP13.21□□□□□ -0.3
UPF3B-202ENST00000345865 LDLRAD3Q86YD5 345 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 PUSL1Q8N0Z8 303 aaKnown RBP13.21□□□□□ -0.3
UPF3B-202ENST00000345865 LGI3Q8N145 548 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 OR1K1Q8NGR3 316 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 WFDC1Q9HC57 220 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 FAM96BQ9Y3D0 163 aa13.21□□□□□ -0.3
UPF3B-202ENST00000345865 LAMA5O15230 3695 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 IGKV1D-13A0A0B4J2D9 117 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 TRAPPC2LH3BP13 241 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 IGKV1-13P0DP09 117 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 PJVKQ0ZLH3 352 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 C17orf78Q8N4C9 275 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 BCL2L2Q92843 193 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-202ENST00000345865 SAT2Q96F10 170 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-202ENST00000345865 IP6K3Q96PC2 410 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 TLNRD1Q9H1K6 362 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 LHX6Q9UPM6 363 aa13.2□□□□□ -0.3
UPF3B-202ENST00000345865 CACNA1HO95180 2353 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 C3orf85A0A1B0GTC6 90 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 E5RGE8 158 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 CDK2AP1O14519 115 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 MED6O75586 246 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 F12P00748 615 aaPredicted RBP13.19□□□□□ -0.3
UPF3B-202ENST00000345865 GAPDHP04406 335 aaKnown RBP13.19□□□□□ -0.3
UPF3B-202ENST00000345865 PRKACAP17612 351 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 SULT1A2P50226 295 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 PMP22Q01453 160 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 CLN3Q13286 438 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 SPATA46Q5T0L3 261 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 C10orf91Q5T1B1 145 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 OR2T2Q6IF00 324 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 ZNF818PQ6ZRF7 136 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 MDP1Q86V88 176 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 DMBX1Q8NFW5 382 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 SECTM1Q8WVN6 248 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 TSNAXQ99598 290 aaKnown RBP13.19□□□□□ -0.3
UPF3B-202ENST00000345865 NSG2Q9Y328 171 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 JTBO76095 146 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 ZNF806P0C7X5 589 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 CD46P15529 392 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms