RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HOXA4Q00056 320 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 ASCL4Q6XD76 172 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 COLCA1Q6ZS62 124 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 P4HA3Q7Z4N8 544 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 MARC2Q969Z3 335 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SPSB4Q96A44 273 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 POM121L2Q96KW2 1035 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 CNTNAP3BQ96NU0 1288 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 CNTNAP3Q9BZ76 1288 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SHARPINQ9H0F6 387 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 ICE1Q9Y2F5 2266 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TRBV6-7A0A0A0MS04 114 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 HSD17B6O14756 317 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 IL18BPO95998 194 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 M6PRP20645 277 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 MDS2Q8NDY4 140 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 LHFPL5Q8TAF8 219 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 LINC00470Q9BZP3 86 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 A0A1B0GV50 99 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 PQLC2LA1A4F0 135 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 CA11O75493 328 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 ACTL6AO96019 429 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 PPYP01298 95 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 DHRS11Q6UWP2 260 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 IL1F10Q8WWZ1 152 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 ERGIC1Q969X5 290 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TP53RKQ96S44 253 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 SLC5A7Q9GZV3 580 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TAF9BQ9HBM6 251 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TREM1Q9NP99 234 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 FBXL17Q9UF56 701 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 GTF3C1Q12789 2109 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 MBPP02686 304 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-201ENST00000341247 PET100P0DJ07 73 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 SOX8P57073 446 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TMEM33P57088 247 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 TMEM187Q14656 261 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 MKXQ8IYA7 352 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 CNEP1R1Q8N9A8 125 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 GLYATL2Q8WU03 294 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 PHYHIPLQ96FC7 376 aa8.87□□□□□ -0.99
LIMA1-201ENST00000341247 LOC105371267A0A1B0GV96 52 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 MEX3AA1L020 520 aaKnown RBP8.86□□□□□ -0.99
LIMA1-201ENST00000341247 ANKRD30BLA7E2S9 258 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 GPR31O00270 319 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 IL15RAQ13261 267 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 CEACAM21Q3KPI0 293 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 SMUG1Q53HV7 270 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 TMEM268Q5VZI3 342 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 PRRX2Q99811 253 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 MED6O75586 246 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF44P15621 663 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 ALKBH6Q3KRA9 238 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 SLC30A7Q8NEW0 376 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 RNF141Q8WVD5 230 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 WDYHV1Q96HA8 205 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 AQP10Q96PS8 301 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 MAGT1Q9H0U3 335 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 PCDHB16Q9NRJ7 776 aa8.86□□□□□ -0.99
LIMA1-201ENST00000341247 IGKV1D-13A0A0B4J2D9 117 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FAM74A7A6NL05 159 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF806P0C7X5 589 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 IGKV1-13P0DP09 117 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ARR3P36575 388 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 RNPS1Q15287 305 aaKnown RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FAM74A3Q4VXF1 159 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 AKIRIN2Q53H80 203 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 TMEM88Q6PEY1 159 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 TFAP2EQ6VUC0 442 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FBXW12Q6X9E4 464 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 C20orf204Q6ZNR8 217 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 SLC35G3Q8N808 338 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 LOXL4Q96JB6 756 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 KMT2EQ8IZD2 1858 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF724A8MTY0 619 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 RPL36A-HNRNPH2H7BZ11 118 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ABCD4O14678 606 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 OMGP23515 440 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 CXorf67Q86X51 503 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF565Q8N9K5 539 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ZFP62Q8NB50 900 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FDCSPQ8NFU4 85 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 MOB3AQ96BX8 217 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 TRIB1Q96RU8 372 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 TSNAXQ99598 290 aaKnown RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 IL36GQ9NZH8 169 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 LHX6Q9UPM6 363 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 UBE2J1Q9Y385 318 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 CADP27708 2225 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 DEDDO75618 318 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 ECI1P42126 302 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FGF12P61328 243 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 GUCA2BQ16661 112 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 FBXW9Q5XUX1 488 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 GAPTQ8N292 157 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 OR1K1Q8NGR3 316 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 STOML3Q8TAV4 291 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 OR2J1Q9GZK6 312 aa8.85□□□□□ -0.99
LIMA1-201ENST00000341247 TNRC6AQ8NDV7 1962 aaKnown RBP8.85□□□□□ -0.99
LIMA1-201ENST00000341247 WT1P19544 449 aaPredicted RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms