RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TSNAXQ99598 290 aaKnown RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 PPIL3Q9H2H8 161 aaKnown RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 TAS2R3Q9NYW6 316 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 ATP6V1G2-DDX39BF2Z307 99 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 RAMP1O60894 148 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 RPA2P15927 270 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 MUC1P15941 1255 aaPredicted RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 LINC00303Q3SY05 128 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 VMA21Q3ZAQ7 101 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 ASCL5Q7RTU5 278 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 H2BFWTQ7Z2G1 175 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 PINX1Q96BK5 328 aaKnown RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 COL25A1Q9BXS0 654 aaPredicted RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 HIPK2Q9H2X6 1198 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 FAM206AQ9NX38 181 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 NPTNQ9Y639 398 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 TGFBR1P36897 503 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 CAMLGP49069 296 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 OR10Z1Q8NGY1 313 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 OR4A16Q8NH70 328 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 ST8SIA2Q92186 375 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 CCL17Q92583 94 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM54Q969K7 222 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 NXF2Q9GZY0 626 aaKnown RBP5.96□□□□□ -1.46
SF3B1-201ENST00000335508 ZNF224Q9NZL3 707 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 FAM96BQ9Y3D0 163 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 HECTD1Q9ULT8 2610 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 A0A1W2PPV4 95 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 E5RGE8 158 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 GOSR2O14653 212 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 NAAAQ02083 359 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 ACOT7LQ6ZUV0 252 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 CADM3Q8N126 398 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 WDYHV1Q96HA8 205 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 POM121L2Q96KW2 1035 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 SHARPINQ9H0F6 387 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 NSG2Q9Y328 171 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 CENPEQ02224 2701 aa5.96□□□□□ -1.46
SF3B1-201ENST00000335508 PPIAL4EA0A075B759 164 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 C7orf66A4D0T2 115 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PPIAL4DF5H284 164 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PIN1P1O15428 100 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 CLDN1O95832 211 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PPIAL4FP0DN26 164 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 KITLGP21583 273 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 BRS3P32247 399 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 GPR6P46095 362 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PHLDA2Q53GA4 152 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 OR14K1Q8NGZ2 314 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 ADAMTS17Q8TE56 1095 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 C2orf50Q96LR7 162 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM68Q96MH6 324 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 LPAR5Q9H1C0 372 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 ZNF665Q9H7R5 613 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PPIAL4AQ9Y536 164 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 A0A1W2PR80 420 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 ANKRD20A5PA0PJZ0 165 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PTGDSP41222 190 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PLA2G7Q13093 441 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 HOGA1Q86XE5 327 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SEC22AQ96IW7 307 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 ZNF251Q9BRH9 671 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 DPCDQ9BVM2 203 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 DUXBA0A1W2PPF3 345 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SPRY1O43609 319 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 MBP02144 154 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 LFNGQ8NES3 379 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 RFESDQ8TAC1 157 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 NRIP2Q9BQI9 281 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SLA2Q9H6Q3 261 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 ASF1BQ9NVP2 202 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SCN2AQ99250 2005 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM14DPA8MWL7 114 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 F2RP25116 425 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 MAGEB1P43366 347 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 DHRS2Q13268 280 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 HNF4GQ14541 408 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 OPCMLQ14982 345 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TESK1Q15569 626 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM268Q5VZI3 342 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 CCDC144NLQ6NUI1 221 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 KCNIP4Q6PIL6 250 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 C6orf201Q7Z4U5 140 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PRR7Q8TB68 274 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 NANPQ8TBE9 248 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 RPS4Y2Q8TD47 263 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 DDOQ99489 341 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 Q9N2K0 584 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TREM1Q9NP99 234 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 H3BMH7 237 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SS18L1O75177 396 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 GPANK1O95872 356 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 FAM87AP0C7U9 286 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 RPS2P15880 293 aaKnown RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 RBM11P57052 281 aaKnown RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 PIGPP57054 158 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 UBA52P62987 128 aaKnown RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SORDQ00796 357 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 IL24Q13007 206 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms