RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ARRDC1Q8N5I2 433 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 BEST4Q8NFU0 473 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 CACNG6Q9BXT2 260 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 NLKQ9UBE8 527 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 WIPI2Q9Y4P8 454 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 NUBP2Q9Y5Y2 271 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 A0A1B0GVG6 124 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF737O75373 536 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 PSG2P11465 335 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF44P15621 663 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 MUC1P15941 1255 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 BTG1P62324 171 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 CCL8P80075 99 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 MRPS11P82912 194 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 PDCD1Q15116 288 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 PAN3Q58A45 887 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 STUMQ69YW2 141 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 Q6ZPA2 131 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 MOB1BQ7L9L4 216 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 C1orf87Q8N0U7 546 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 OR4S1Q8NGB4 309 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 OR4D10Q8NGI6 311 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 OR4K15Q8NH41 348 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 ANGPTL6Q8NI99 470 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 SDSLQ96GA7 329 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 HDHD3Q9BSH5 251 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 TRAF4Q9BUZ4 470 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 DECR2Q9NUI1 292 aa12.52□□□□□ -0.41
CCDC88C-202ENST00000334448 ABCA4P78363 2273 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 IGKV1D-17A0A075B6S4 117 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 UBE2QL1A1L167 161 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 OR2AT4A6NND4 320 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 CEACAM18A8MTB9 384 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 NDUFB6O95139 128 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 CD8AP01732 235 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 TCRBP04435 133 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 IRF2P14316 349 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 AMY2BP19961 511 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 GIFP27352 417 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 HLA-DMAP28067 261 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 HRH1P35367 487 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 MECP2P51608 486 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 MICBQ29980 383 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 ATPAF1Q5TC12 328 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 OR52W1Q6IF63 320 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF497Q6ZNH5 498 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 BTN2A1Q7KYR7 527 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 OVCH2Q7RTZ1 564 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 OR5AP2Q8NGF4 316 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 MRPL30Q8TCC3 161 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 UPRTQ96BW1 309 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 PRRT1Q99946 306 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 SLC25A21Q9BQT8 299 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 TINAGL1Q9GZM7 467 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 DNTTIP1Q9H147 329 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 NCOR1P1Q9H4R4 102 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM165Q9HC07 324 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 Q9N2K0 584 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM106BQ9NUM4 274 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 ETAA1Q9NY74 926 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 ANXA10Q9UJ72 324 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 MGAT4AQ9UM21 535 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 PKDREJQ9NTG1 2253 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 LRRK2Q5S007 2527 aa12.51□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM82A0PJX8 343 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 RFPL4AA6NLU0 287 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 DISC1C4P0D8 188 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 C3orf80F5H4A9 247 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 RFPL4AL1F8VTS6 287 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 TMEM178BH3BS89 294 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 LGALS8O00214 317 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 SIRPB1O00241 398 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 PSPNO60542 156 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 DIRAS3O95661 229 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 PRDX2P32119 198 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 OR3A1P47881 315 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 RBMS2Q15434 407 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 BRICD5Q6PL45 260 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 C17orf107Q6ZR85 190 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 ZCCHC24Q8N2G6 241 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 CD177Q8N6Q3 437 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 OR5H2Q8NGV7 314 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 OR56B4Q8NH76 319 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 DYRK2Q92630 601 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 RDH5Q92781 318 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 ST6GALNAC5Q9BVH7 336 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF286AQ9HBT8 521 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 MBNL3Q9NUK0 354 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 ZNF701Q9NV72 531 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 MCUBQ9NWR8 336 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 DNAJB11Q9UBS4 358 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 SCP2D1Q9UJQ7 156 aa12.5□□□□□ -0.41
CCDC88C-202ENST00000334448 IGKV1D-8A0A087WSZ0 117 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 KIR2DS1A0A191URI9 304 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 OOEPA6NGQ2 149 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 M0QYG6 137 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 AMY2AP04746 511 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 SOD3P08294 240 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 KIR2DS4P43632 304 aa12.49□□□□□ -0.41
CCDC88C-202ENST00000334448 CCR6P51684 374 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms