RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 RAB11AP62491 216 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 SLC22A25Q6T423 547 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 SYT13Q7L8C5 426 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 FBXL14Q8N1E6 418 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 C17orf78Q8N4C9 275 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 DEFB123Q8N688 67 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 FRZBQ92765 325 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 THOC3Q96J01 351 aaKnown RBP11.96□□□□□ -0.5
SYNE3-201ENST00000334258 MRPL13Q9BYD1 178 aaKnown RBP11.96□□□□□ -0.5
SYNE3-201ENST00000334258 GPR173Q9NS66 373 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 ZNF581Q9P0T4 197 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 KIAA1456Q9P272 454 aa11.96□□□□□ -0.5
SYNE3-201ENST00000334258 TNFSF12O43508 249 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 SPRY1O43609 319 aaPredicted RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 NKX2-1P43699 371 aaPredicted RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 ZNF133P52736 654 aaPredicted RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 PRSS12P56730 875 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 RUNX1Q01196 453 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 SLC35G3Q8N808 338 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 OR5C1Q8NGR4 320 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 B3GAT1Q9P2W7 334 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 ELOA3CA0A087WX78 387 aaPredicted RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 SCAF4O95104 1147 aaKnown RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 GRB2P62993 217 aaKnown RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 SPIN3Q5JUX0 258 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 C1orf87Q8N0U7 546 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 BOD1Q96IK1 185 aa11.95□□□□□ -0.5
SYNE3-201ENST00000334258 UBE2J1Q9Y385 318 aaPredicted RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 CNOT1A5YKK6 2376 aaKnown RBP11.95□□□□□ -0.5
SYNE3-201ENST00000334258 NKX2-6A6NCS4 301 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 CD38P28907 300 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 GLIPR1P48060 266 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 TRA2AQ13595 282 aaKnown RBP eCLIP11.94□□□□□ -0.5
SYNE3-201ENST00000334258 PDCD1Q15116 288 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 CMTM1Q8IZ96 169 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 OR10AD1Q8NGE0 317 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 GNG13Q9P2W3 67 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 PGA4P0DJD7 388 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 PGA3P0DJD8 388 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 PGA5P0DJD9 388 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 RAB4AP20338 218 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 HLA-DRB3P79483 266 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 ZNF385CQ66K41 422 aaPredicted RBP11.94□□□□□ -0.5
SYNE3-201ENST00000334258 SPSB3Q6PJ21 355 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 OR6X1Q8NH79 312 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 LYZL4Q96KX0 146 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 DMXL1Q9Y485 3027 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 A0A087WWC5 75 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 A0A1B0GW64 132 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 IGSF23A1L1A6 192 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 NPIPB13A6NJU9 1138 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 FOXI3A8MTJ6 420 aaPredicted RBP11.94□□□□□ -0.5
SYNE3-201ENST00000334258 NPIPB4C9JG80 1138 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 DHRS3O75911 302 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 IFNA10P01566 189 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 ZNF695Q8IW36 515 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 ABHD5Q8WTS1 349 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 TM2D1Q9BX74 207 aa11.94□□□□□ -0.5
SYNE3-201ENST00000334258 RIF1Q5UIP0 2472 aaKnown RBP11.94□□□□□ -0.5
SYNE3-201ENST00000334258 ZFP92A6NM28 416 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 ZNF705GA8MUZ8 300 aaPredicted RBP11.93□□□□□ -0.5
SYNE3-201ENST00000334258 ICAM4Q14773 271 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 CPEB3Q8NE35 698 aaKnown RBP11.93□□□□□ -0.5
SYNE3-201ENST00000334258 ADAM10O14672 748 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 TLX3O43711 291 aaPredicted RBP11.93□□□□□ -0.5
SYNE3-201ENST00000334258 CCL1P22362 96 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 CCDC71LQ8N9Z2 235 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 M1APQ8TC57 530 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 PP6455Q8WZ26 134 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 MSI2Q96DH6 328 aaKnown RBP11.93□□□□□ -0.5
SYNE3-201ENST00000334258 C18orf12Q96KH6 178 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 SLC25A31Q9H0C2 315 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 IL17BQ9UHF5 180 aa11.93□□□□□ -0.5
SYNE3-201ENST00000334258 FOXD3Q9UJU5 478 aaPredicted RBP11.93□□□□□ -0.5
SYNE3-201ENST00000334258 GEMIN2O14893 280 aaKnown RBP11.92□□□□□ -0.5
SYNE3-201ENST00000334258 EFNA2O43921 213 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 IL2RGP31785 369 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 TLE4Q04727 773 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 SAPCD1Q5SSQ6 148 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 DMRTA1Q5VZB9 504 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 Q96M66 194 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 TP53RKQ96S44 253 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 OR51B6Q9H340 312 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 PLEKHF2Q9H8W4 249 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 PNRC2Q9NPJ4 139 aaKnown RBP11.92□□□□□ -0.5
SYNE3-201ENST00000334258 FRYQ5TBA9 3013 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 HSPB1P04792 205 aaKnown RBP11.92□□□□□ -0.5
SYNE3-201ENST00000334258 TUBG1P23258 451 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 CD200P41217 278 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 CLDN17P56750 224 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 OR1D5P58170 312 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 TMEM252Q8N6L7 170 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 SSC4DQ8WTU2 575 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 TMEM171Q8WVE6 324 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 PLEK2Q9NYT0 353 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 LRFN1Q9P244 771 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 LMO1P25800 156 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 DYNLT3P51808 116 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 FOXO1Q12778 655 aa11.92□□□□□ -0.5
SYNE3-201ENST00000334258 LBHQ53QV2 105 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms