RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ANGPTL7O43827 346 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 NOS1APO75052 506 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 PDCD6O75340 191 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 NDUFB6O95139 128 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 RAB3DO95716 219 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 H2AFB2P0C5Z0 115 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 LYNX1P0DP58 116 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 PTHLHP12272 177 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 DTYMKP23919 212 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MECP2P51608 486 aaKnown RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 PRSS12P56730 875 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 RAB25P57735 213 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 TAS2R46P59540 309 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 GUCA2AQ02747 115 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 ZNF782Q6ZMW2 699 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 OR10K1Q8NGX5 313 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 REG4Q9BYZ8 158 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 IFT22Q9H7X7 185 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MCUBQ9NWR8 336 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 HMX3A6NHT5 357 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 LY6G6DO95868 133 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 CD3DP04234 171 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 FOSL1P15407 271 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 CHATP28329 748 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 SRSF7Q16629 238 aaKnown RBP eCLIP13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 TATDN3Q17R31 274 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 RNASE10Q5GAN6 216 aaKnown RBP13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 DMRTC1Q5HYR2 192 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 FIP1L1Q6UN15 594 aaKnown RBP13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 HOGA1Q86XE5 327 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 OR4C16Q8NGL9 310 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 UPRTQ96BW1 309 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 RIMS4Q9H426 269 aaPredicted RBP13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 ZMAT3Q9HA38 289 aaKnown RBP13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 NUDT15Q9NV35 164 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 KCNK7Q9Y2U2 307 aa13.86□□□□□ -0.19
PDLIM1-201ENST00000329399 JMJD1CQ15652 2540 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 HIVEP2P31629 2446 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 IGLV3-9A0A075B6K5 115 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 PEX14O75381 377 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 PLATP00750 562 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 SFTPBP07988 381 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 GABRR1P24046 479 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 RBMXP38159 391 aaKnown RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 PPOXP50336 477 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 KLF3P57682 345 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 KRTAP1-1Q07627 177 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 HAGHLQ6PII5 290 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 TMEM17Q86X19 198 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 ARRDC1Q8N5I2 433 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 NEURL2Q9BR09 285 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 FGF23Q9GZV9 251 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 ALX4Q9H161 411 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 TLNRD1Q9H1K6 362 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 BARX1Q9HBU1 254 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 MTCH1Q9NZJ7 389 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 TAAR3PQ9P1P4 343 aa13.85□□□□□ -0.19
PDLIM1-201ENST00000329399 SSX5O60225 188 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 IFNA6P05013 189 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 IL5P05113 134 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 TAF9Q16594 264 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 VAX1Q5SQQ9 334 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 AKAP14Q86UN6 197 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 FAM58AQ8N1B3 248 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 C10orf105Q8TEF2 133 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 NUDCD2Q8WVJ2 157 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 SCGB3A2Q96PL1 93 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 C20orf85Q9H1P6 137 aa13.84□□□□□ -0.19
PDLIM1-201ENST00000329399 PLSCR5A0PG75 271 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 C7orf66A4D0T2 115 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 GEMIN2O14893 280 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 LILRA1O75019 489 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 PTBP3O95758 552 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 HPXP02790 462 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 BCL3P20749 454 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 CD200P41217 278 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 CCR6P51684 374 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 RBM39Q14498 530 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 SPIN3Q5JUX0 258 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 METTL11BQ5VVY1 283 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 SFRP4Q6FHJ7 346 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 OR4K15Q8NH41 348 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 EMG1Q92979 244 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 SLAMF9Q96A28 289 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 DIRC2Q96SL1 478 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 SEBOXQ9HB31 216 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 GPN1Q9HCN4 374 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 DYNLRB1Q9NP97 96 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 MYOZ1Q9NP98 299 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 RCC2Q9P258 522 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 GLS2Q9UI32 602 aa13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 YLPM1P49750 1951 aaKnown RBP13.83□□□□□ -0.2
PDLIM1-201ENST00000329399 M0R233 179 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 COL8A2P25067 703 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 CFHR2P36980 270 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 ECI1P42126 302 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 ERVK11-1P61568 191 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 CDK10Q15131 360 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 GRK1Q15835 563 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 SPRNQ5BIV9 151 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms