RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRSS3P2Q8NHM4 247 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 H1FXQ92522 213 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 MRPL24Q96A35 216 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 WDR61Q9GZS3 305 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 KIAA1456Q9P272 454 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 ANXA10Q9UJ72 324 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 ERRFI1Q9UJM3 462 aaPredicted RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 PCOLCE2Q9UKZ9 415 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 A0A096LPE4 126 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 A0A1W2PPZ6 126 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 GREM1O60565 184 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 PPOXP50336 477 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 C20orf196Q8IYI0 205 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 SARAFQ96BY9 339 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 PECRQ9BY49 303 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 SHISA7A6NL88 538 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 SHISA8B8ZZ34 492 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 C11orf94C9JXX5 98 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 CNIH1O95406 144 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 EML2O95834 649 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 CYC1P08574 325 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 B4GALT1P15291 398 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 CDX1P47902 265 aaPredicted RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 RPS16P62249 146 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 COL19A1Q14993 1142 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 ANKRD37Q7Z713 158 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 ADAD2Q8NCV1 583 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 ZNF355PQ9NSJ1 428 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 A0A1B0GV90 55 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 A6NDN8 102 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 TNFSF14O43557 240 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 TRGC2P03986 189 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 GAPDHP04406 335 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 SKP2Q13309 424 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 REC114Q7Z4M0 266 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 BARX1Q9HBU1 254 aaPredicted RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 RCC2Q9P258 522 aaKnown RBP10.17□□□□□ -0.78
VPS39-201ENST00000318006 ZMIZ1Q9ULJ6 1067 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 LPAR6P43657 344 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 PAFAH1B2P68402 229 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 MESP2Q0VG99 397 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 CBLN3Q6UW01 205 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SCCPDHQ8NBX0 429 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 ZNF391Q9UJN7 358 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 VSIG4Q9Y279 399 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 RGPD3A6NKT7 1758 aaPredicted RBP10.16□□□□□ -0.78
VPS39-201ENST00000318006 TRAV8-7A0A075B6U6 113 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SPINT1O43278 529 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 VDAC1P21796 283 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 HTR1DP28221 377 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 TMEM251Q8N6I4 163 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 A0A1W2PQF6 199 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 LNP1A1A4G5 178 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SYNGR2O43760 224 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 CDS2O95674 445 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 RCC1P18754 421 aaPredicted RBP10.16□□□□□ -0.78
VPS39-201ENST00000318006 DUSP2Q05923 314 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 MICBQ29980 383 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 ACSM6Q6P461 480 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 NPEPL1Q8NDH3 523 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 OR1F12Q8NHA8 337 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 OIT3Q8WWZ8 545 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 POM121L2Q96KW2 1035 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 ST6GALNAC2Q9UJ37 374 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 CABIN1Q9Y6J0 2220 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 DIRC3C9JPN6 131 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 CHST1O43916 411 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SOX15O60248 233 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SEMA7AO75326 666 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 TMIGD3P0DMS9 266 aaPredicted RBP10.16□□□□□ -0.78
VPS39-201ENST00000318006 RHBDD2Q6NTF9 364 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 SMRP1Q8NCR6 262 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 OR1L6Q8NGR2 347 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 METTL1Q9UBP6 276 aaKnown RBP10.16□□□□□ -0.78
VPS39-201ENST00000318006 NAGKQ9UJ70 344 aa10.16□□□□□ -0.78
VPS39-201ENST00000318006 PMS2P1A4D2B8 440 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 LRRC30A6NM36 301 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 CTLA4P16410 223 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 NDUFB7P17568 137 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 CAMPP49913 170 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 PSG6Q00889 435 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 INSM1Q01101 510 aaPredicted RBP10.15□□□□□ -0.78
VPS39-201ENST00000318006 PDCD1Q15116 288 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 PABPC1L2AQ5JQF8 200 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 DTD1Q8TEA8 209 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 ALKBH3Q96Q83 286 aaPredicted RBP10.15□□□□□ -0.78
VPS39-201ENST00000318006 RER1O15258 196 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 SOCS1O15524 211 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 CYB5R3P00387 301 aaPredicted RBP10.15□□□□□ -0.78
VPS39-201ENST00000318006 ATP6V0CP27449 155 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 DMWDQ09019 674 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 CEACAM16Q2WEN9 425 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 TMEM255AQ5JRV8 349 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 OR10V1Q8NGI7 309 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 VSTM2LQ96N03 204 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 TREM2Q9NZC2 230 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 WASHC3Q9Y3C0 194 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 TIMM9Q9Y5J7 89 aa10.15□□□□□ -0.78
VPS39-201ENST00000318006 TMEM30CPA0ZSE6 113 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 CRYM-AS1A6NIL9 109 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms